MC-Sym 3.3.2 - User Manual
Laboratoire de Biologie Informatique et Théorique
Contents
Introduction
The Biology Story
The Informatics Story
The New MC-Sym
MC-Sym III: A new approach
Fragment Generators
The Fragment Generator hierarchy
Constraint objects
Related Work
Installation
The annotation process
Local referentials and homogeneous transformation matrices
Nucleotide conformations
Base-base interactions
Base pairing
Base stacking
Commands reference
Sequence description
sequence
Conformation
residue
Relations between nucleotides
connect
pair
Building information
backtrack
cache
library
change_id
strip
Constraints
Adjacency
Angle
Residue clash
Distance
Relation
Torsion
Exploration of the conformational space
explore
exploreLV
Miscellaneous commands
source
restore
notes
remark
reset
version
quit
Comments
Database properties reference
Properties
Conformational properties of the residue
Properties of the relation between two residues
A complete example: The tRNA Anticodon stem loop Script
Base pairings classification
Bibliography
Index
Webmaster