#include "atom.h"
#include "object.h"
#include "xmlcpg.h"
Go to the source code of this file.
Typedefs | |
typedef rnamlBASE | rnamlBase |
Rnaml structure containing the base informations. | |
Functions | |
rnamlBase * | rnamlnewBase () |
Creates a new rnamlBase structure. | |
rnamlBase * | rnamlcloneBase (const rnamlBase *base) |
Clones a rnamlBase struture. | |
void | rnamldeleteBase (rnamlBase *base) |
Frees the rnamlBase structure. | |
int | rnamlisBase (const rnamlObject *obj) |
Tells wheter the object is a rnamlBase. | |
int | rnamlequalsBase (const rnamlBase *left, const rnamlBase *right) |
Tells if left and right are equals. | |
const char * | rnamlgetBaseStrand (const rnamlBase *base) |
Gets the strand from the base. | |
void | rnamlsetBaseStrand (rnamlBase *base, const char *strand) |
Sets the base strand. | |
int | rnamlgetBasePosition (const rnamlBase *base) |
Gets the base position. | |
void | rnamlsetBasePosition (rnamlBase *base, int position) |
Sets the base position. | |
const char * | rnamlgetBaseBaseType (const rnamlBase *base) |
Gets the baseType from the base. | |
void | rnamlsetBaseBaseType (rnamlBase *base, const char *baseType) |
Sets the base baseType. | |
char | rnamlgetBaseAltLoc (const rnamlBase *base) |
Gets the base altLoc. | |
void | rnamlsetBaseAltLoc (rnamlBase *base, char altLoc) |
Sets the base altLoc. | |
char | rnamlgetBaseInsertion (const rnamlBase *base) |
Gets the base insertion. | |
void | rnamlsetBaseInsertion (rnamlBase *base, char insertion) |
Sets the base insertion. | |
void | rnamladdBaseAtom (rnamlBase *base, rnamlAtom *atom) |
Adds a atom into a base. | |
xmlcpgList * | rnamlgetBaseAtoms (rnamlBase *base) |
Gets the base's atom list. | |
xmlcpgObject * | rnamltoXMLBase (const rnamlBase *base) |
Translates the rnamlBase structure into a xmlcpgElement conforming to the RNAML standard. |
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Rnaml structure containing the base informations.
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Adds a atom into a base.
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Clones a rnamlBase struture.
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Frees the rnamlBase structure.
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Tells if left and right are equals.
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Gets the base altLoc.
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Gets the base's atom list.
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Gets the baseType from the base.
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Gets the base insertion.
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Gets the base position.
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Gets the strand from the base.
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Tells wheter the object is a rnamlBase.
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Creates a new rnamlBase structure.
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Sets the base altLoc.
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Sets the base baseType. The previous base baseType is freed and a copy of baseType is generated.
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Sets the base insertion.
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Sets the base position.
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Sets the base strand. The previous base strand is freed and a copy of strand is generated.
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Translates the rnamlBase structure into a xmlcpgElement conforming to the RNAML standard.
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