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xmlcpg Compound Members
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Here is a list of all class members with links to the class documentation for each member:
- addAffiliation()
: rnaml::Person
- addAliSequence()
: rnaml::Alignment
- addAnalysisId()
: rnaml::Object
- addAtom()
: rnaml::Base
- addBase()
: rnaml::Model
- addChild()
: rnaml::StrAnnotation, rnaml::SeqAnnotation, rnaml::Rnaml, rnaml::Revision, rnaml::Reference, rnaml::Program, rnaml::NumberingSystem, rnaml::MoleculeClass, rnaml::Analysis
- addDatabaseId()
: rnaml::Object
- addFreeEnergy()
: rnaml::ModelInfo
- addModel()
: rnaml::Structure
- addNumberingSystem()
: rnaml::Sequence
- addReferenceId()
: rnaml::Object
- addSequence()
: rnaml::Molecule
- addSsBaseCoord()
: rnaml::SecondaryStructureDisplay
- addStrAnnotation()
: rnaml::Interactions
- addValue()
: rnaml::NumberingTable
- Affiliation()
: rnaml::Affiliation
- affiliations
: rnaml::Person, rnamlPERSON
- Alignment()
: rnaml::Alignment
- alignmentId
: rnamlCONSENSUSMOLECULE
- AlignmentId()
: rnaml::AlignmentId
- AliSequence()
: rnaml::AliSequence
- aliSequences
: rnaml::Alignment, rnamlALIGNMENT
- alpha
: rnamlBASETORSIONANGLES
- altLoc
: rnamlBASE
- Analysis()
: rnaml::Analysis
- analysisIds
: rnaml::Object, rnamlOBJECT
- assoc
: xmlcpgMap
- Atom()
: rnaml::Atom
- atoms
: rnaml::Base, rnamlBASE
- atomType
: rnamlSURFACECONSTRAINT, rnamlATOM
- atomType1
: rnamlDISTANCECONSTRAINT
- atomType2
: rnamlDISTANCECONSTRAINT
- attdefs
: xmlcpgAttlistDecl
- attribute
: xmlcpgAttValue, xmlcpgFixed
- attributes
: xmlcpgElement
- attType
: xmlcpgAttDef
- Author()
: rnaml::Author
- Base()
: rnaml::Base
- BaseConformation()
: rnaml::BaseConformation
- baseId
: rnamlSURFACECONSTRAINT, rnamlSSBASECOORD, rnamlMODIFICATION, rnamlBASEID5P, rnamlBASEID3P, rnamlBASECONFORMATION
- BaseId()
: rnaml::BaseId
- baseId1
: rnamlDISTANCECONSTRAINT, rnamlBASESTACK
- baseId2
: rnamlDISTANCECONSTRAINT, rnamlBASESTACK
- baseId3p
: rnamlHELIX, rnamlBASEPAIR
- BaseId3p()
: rnaml::BaseId3p
- baseId5p
: rnamlSEGMENT, rnamlHELIX, rnamlBASEPAIR
- BaseId5p()
: rnaml::BaseId5p
- BasePair()
: rnaml::BasePair
- BasePairId()
: rnaml::BasePairId
- bases
: rnaml::Model, rnamlMODEL
- BaseStack()
: rnaml::BaseStack
- BaseTorsionAngles()
: rnaml::BaseTorsionAngles
- baseTorsionAngles
: rnamlBASECONFORMATION
- BaseTriple()
: rnaml::BaseTriple
- baseType
: rnamlBASE
- begin
: xmlcpgList
- beta
: rnamlBASETORSIONANGLES
- bondOrientation
: rnamlBASEPAIR
- BookTitle()
: rnaml::BookTitle
- charge
: rnamlATOM
- chi
: rnamlBASETORSIONANGLES
- child
: rnamlSEQANNOTATION, rnamlPATH, xmlcpgChildrenPlus, xmlcpgChildrenStar, xmlcpgChildrenOpt
- child1
: rnamlBASETRIPLE
- child2
: rnamlBASETRIPLE
- child3
: rnamlBASETRIPLE
- childlist
: xmlcpgChildrenSeq, xmlcpgChildrenAlt
- children
: rnaml::StrAnnotation, rnaml::SeqAnnotation, rnaml::Rnaml, rnaml::Revision, rnaml::Reference, rnaml::Program, rnaml::NumberingSystem, rnaml::MoleculeClass, rnaml::Analysis, rnamlSTRANNOTATION, rnamlRNAML, rnamlREVISION, rnamlREFERENCE, rnamlPROGRAM, rnamlNUMBERINGSYSTEM, rnamlMOLECULECLASS, rnamlANALYSIS
- circular
: rnamlSEQUENCE
- clazz
: rnamlTAXONOMY
- clone()
: rnaml::Volume, rnaml::Url, rnaml::Unmarshaller, rnaml::Title, rnaml::Taxonomy, rnaml::SurfaceConstraint, rnaml::Structure, rnaml::StrAnnotation, rnaml::SsBaseCoord, rnaml::SingleStrand, rnaml::Sequence, rnaml::SeqData, rnaml::SeqAnnotation, rnaml::Segment, rnaml::SecondaryStructureDisplay, rnaml::Rnaml, rnaml::Revision, rnaml::Resolution, rnaml::Reference, rnaml::PubmedId, rnaml::Pseudoknot, rnaml::ProgVersion, rnaml::Program, rnaml::ProgName, rnaml::Person, rnaml::PcData, rnaml::Path, rnaml::Pages, rnaml::NumberingTable, rnaml::NumberingSystem, rnaml::NumberingRange, rnaml::MoleculeId, rnaml::MoleculeClass, rnaml::Molecule, rnaml::Modification, rnaml::ModelInfo, rnaml::ModelId, rnaml::Model, rnaml::Method, rnaml::Marshaller, rnaml::Length, rnaml::Journal, rnaml::Issue, rnaml::Interactions, rnaml::Identity, rnaml::HelixId, rnaml::Helix, rnaml::FreeEnergy, rnaml::File, rnaml::End, rnaml::Editor, rnaml::DistanceConstraint, rnaml::Date, rnaml::DataBaseEntry, rnaml::ConsensusMolecule, rnaml::BookTitle, rnaml::BaseTriple, rnaml::BaseTorsionAngles, rnaml::BaseStack, rnaml::BasePairId, rnaml::BasePair, rnaml::BaseId5p, rnaml::BaseId3p, rnaml::BaseId, rnaml::BaseConformation, rnaml::Base, rnaml::Author, rnaml::Atom, rnaml::Analysis, rnaml::AliSequence, rnaml::AlignmentId, rnaml::Alignment, rnaml::Affiliation
- close()
: rnaml::OutputStream, rnaml::InputStream, rnaml::GZIPInputStream, rnaml::FileInputStream
- comment
: rnamlOBJECT
- ConsensusMolecule()
: rnaml::ConsensusMolecule
- content
: xmlcpgElement
- contentspec
: xmlcpgElementDecl
- cr
: xmlcpgChar
- cStruct
: rnaml::Object
- gamma
: rnamlBASETORSIONANGLES
- genus
: rnamlTAXONOMY
- getAffiliations()
: rnaml::Person
- getAlignmentId()
: rnaml::ConsensusMolecule
- getAliSequences()
: rnaml::Alignment
- getAlpha()
: rnaml::BaseTorsionAngles
- getAltLoc()
: rnaml::Base
- getAnalysisIds()
: rnaml::Object
- getAnalysisIdsString()
: rnaml::Object
- getAtoms()
: rnaml::Base
- getAtomType()
: rnaml::SurfaceConstraint, rnaml::Atom
- getAtomType1()
: rnaml::DistanceConstraint
- getAtomType2()
: rnaml::DistanceConstraint
- getBaseId()
: rnaml::SurfaceConstraint, rnaml::SsBaseCoord, rnaml::Modification, rnaml::BaseId5p, rnaml::BaseId3p, rnaml::BaseConformation
- getBaseId1()
: rnaml::DistanceConstraint, rnaml::BaseStack
- getBaseId2()
: rnaml::DistanceConstraint, rnaml::BaseStack
- getBaseId3p()
: rnaml::Helix, rnaml::BasePair
- getBaseId5p()
: rnaml::Segment, rnaml::Helix, rnaml::BasePair
- getBases()
: rnaml::Model
- getBaseTorsionAngles()
: rnaml::BaseConformation
- getBaseType()
: rnaml::Base
- getBeta()
: rnaml::BaseTorsionAngles
- getBondOrientation()
: rnaml::BasePair
- getCharge()
: rnaml::Atom
- getChi()
: rnaml::BaseTorsionAngles
- getChild()
: rnaml::Path
- getChild1()
: rnaml::BaseTriple
- getChild2()
: rnaml::BaseTriple
- getChild3()
: rnaml::BaseTriple
- getChildren()
: rnaml::StrAnnotation, rnaml::SeqAnnotation, rnaml::Rnaml, rnaml::Revision, rnaml::Reference, rnaml::Program, rnaml::NumberingSystem, rnaml::MoleculeClass, rnaml::Analysis
- getCircular()
: rnaml::Sequence
- getClass()
: rnaml::Taxonomy
- getComment()
: rnaml::Object
- getCStructure()
: rnaml::OutputStream, rnaml::Object, rnaml::InputStream, rnaml::GZIPInputStream, rnaml::FileInputStream
- getDataBase()
: rnaml::DataBaseEntry
- getDatabaseIds()
: rnaml::Object
- getDatabaseIdsString()
: rnaml::Object
- getDay()
: rnaml::Date
- getDelta()
: rnaml::BaseTorsionAngles
- getDomain()
: rnaml::Taxonomy
- getEdge3p()
: rnaml::BasePair
- getEdge5p()
: rnaml::BasePair
- getElement()
: rnaml::Atom
- getEnd()
: rnaml::Segment, rnaml::NumberingRange
- getEndPage()
: rnaml::Pages
- getEntry()
: rnaml::DataBaseEntry
- getEOS()
: rnaml::OutputStream, rnaml::InputStream, rnaml::GZIPInputStream, rnaml::FileInputStream
- getEpsilon()
: rnaml::BaseTorsionAngles
- getError()
: rnaml::OutputStream, rnaml::InputStream, rnaml::GZIPInputStream, rnaml::FileInputStream
- getErrorString()
: rnaml::OutputStream, rnaml::InputStream, rnaml::GZIPInputStream, rnaml::FileInputStream
- getFamily()
: rnaml::Taxonomy
- getFD()
: rnaml::FileOutputStream, rnaml::FileInputStream
- getFirstName()
: rnaml::Person
- getFreeEnergies()
: rnaml::ModelInfo
- getGamma()
: rnaml::BaseTorsionAngles
- getGenus()
: rnaml::Taxonomy
- getGlycosyl()
: rnaml::BaseConformation
- getHelixId1()
: rnaml::Pseudoknot
- getHelixId2()
: rnaml::Pseudoknot
- getId()
: rnaml::Reference, rnaml::NumberingSystem, rnaml::Molecule, rnaml::Model, rnaml::Helix, rnaml::DataBaseEntry, rnaml::Analysis, rnaml::Alignment
- getIdentity()
: rnaml::MoleculeClass, rnaml::Molecule
- getInsertion()
: rnaml::Base
- getKingdom()
: rnaml::Taxonomy
- getLastName()
: rnaml::Person
- getLength()
: rnaml::Sequence, rnaml::NumberingTable, rnaml::Helix
- getMean()
: rnaml::DistanceConstraint
- getMethod()
: rnaml::ModelInfo
- getModelId()
: rnaml::BaseId
- getModelInfo()
: rnaml::Model
- getModels()
: rnaml::Structure
- getModifiedType()
: rnaml::Modification
- getMolecule()
: rnaml::ConsensusMolecule
- getMoleculeId()
: rnaml::BaseId, rnaml::AliSequence
- getMonth()
: rnaml::Date
- getName()
: rnaml::Identity
- getNu0()
: rnaml::BaseTorsionAngles
- getNu1()
: rnaml::BaseTorsionAngles
- getNu2()
: rnaml::BaseTorsionAngles
- getNu3()
: rnaml::BaseTorsionAngles
- getNu4()
: rnaml::BaseTorsionAngles
- getNumberingSystems()
: rnaml::Sequence
- getOccupancy()
: rnaml::Atom
- getOrder()
: rnaml::Taxonomy
- getPath()
: rnaml::DataBaseEntry
- getPerson()
: rnaml::Author
- getPhylum()
: rnaml::Taxonomy
- getPosition()
: rnaml::BaseId, rnaml::Base
- getPucker()
: rnaml::BaseConformation
- getRange()
: rnaml::DistanceConstraint
- getRef()
: rnaml::MoleculeId, rnaml::ModelId, rnaml::HelixId, rnaml::BasePairId, rnaml::AlignmentId
- getReferenceIds()
: rnaml::Object
- getReferenceIdsString()
: rnaml::Object
- getResolution()
: rnaml::ModelInfo
- getSecondaryStructureDisplay()
: rnaml::Model
- getSegId()
: rnaml::Atom
- getSegment()
: rnaml::SingleStrand
- getSegName()
: rnaml::Segment
- getSeqAnnotation()
: rnaml::Sequence
- getSeqData()
: rnaml::Sequence, rnaml::AliSequence
- getSequences()
: rnaml::Molecule
- getSerial()
: rnaml::Atom
- getSpecies()
: rnaml::Taxonomy
- getSsBaseCoords()
: rnaml::SecondaryStructureDisplay
- getStart()
: rnaml::NumberingRange
- getStartPage()
: rnaml::Pages
- getStrain()
: rnaml::Taxonomy
- getStrand()
: rnaml::Sequence, rnaml::BaseId, rnaml::Base
- getStrandOrientation()
: rnaml::BasePair
- getStrAnnotation()
: rnaml::Model
- getStrAnnotations()
: rnaml::Interactions
- getStructure()
: rnaml::Molecule
- getSurfaceValue()
: rnaml::SurfaceConstraint
- getTaxonomy()
: rnaml::Identity
- getTempFactor()
: rnaml::Atom
- getType()
: rnaml::Molecule
- getUsedInFile()
: rnaml::NumberingSystem
- getValue()
: rnaml::Volume, rnaml::Url, rnaml::Title, rnaml::SeqData, rnaml::Resolution, rnaml::PubmedId, rnaml::ProgVersion, rnaml::ProgName, rnaml::PcData, rnaml::Method, rnaml::Length, rnaml::Journal, rnaml::Issue, rnaml::FreeEnergy, rnaml::File, rnaml::End, rnaml::Editor, rnaml::BookTitle, rnaml::Affiliation
- getValues()
: rnaml::NumberingTable
- getVersion()
: rnaml::Rnaml
- getWeight()
: rnaml::DistanceConstraint
- getX()
: rnaml::SsBaseCoord, rnaml::Atom
- getY()
: rnaml::SsBaseCoord, rnaml::Atom
- getYear()
: rnaml::Date
- getZ()
: rnaml::Atom
- getZeta()
: rnaml::BaseTorsionAngles
- glycosyl
: rnamlBASECONFORMATION
- GZIPInputStream()
: rnaml::GZIPInputStream
- GZIPOutputStream()
: rnaml::GZIPOutputStream
- id
: rnamlREFERENCE, rnamlNUMBERINGSYSTEM, rnamlMOLECULE, rnamlMODEL, rnamlHELIX, rnamlDATABASEENTRY, rnamlANALYSIS, rnamlALIGNMENT, xmlcpgNotationDecl, xmlcpgExternalID
- Identity()
: rnaml::Identity
- identity
: rnamlMOLECULECLASS, rnamlMOLECULE
- insertion
: rnamlBASE
- Interactions()
: rnaml::Interactions
- is
: rnaml::GZIPInputStream, rnaml::FileInputStream
- isExtern
: xmlcpgNotationDecl, xmlcpgPEDecl, xmlcpgGEDecl, xmlcpgAttlistDecl, xmlcpgElementDecl
- Issue()
: rnaml::Issue
- name
: rnamlIDENTITY, xmlcpgPublicID, xmlcpgNotationDecl, xmlcpgNDataDecl, xmlcpgSystemExternalID, xmlcpgPEDecl, xmlcpgGEDecl, xmlcpgEntityRef, xmlcpgAttDef, xmlcpgAttlistDecl, xmlcpgElementDecl, xmlcpgAttribute, xmlcpgElement, xmlcpgPEReference, xmlcpgDocTypeDecl
- names
: xmlcpgNotationType
- ndata
: xmlcpgExternalID
- nmTokens
: xmlcpgEnumeration
- nu0
: rnamlBASETORSIONANGLES
- nu1
: rnamlBASETORSIONANGLES
- nu2
: rnamlBASETORSIONANGLES
- nu3
: rnamlBASETORSIONANGLES
- nu4
: rnamlBASETORSIONANGLES
- NumberingRange()
: rnaml::NumberingRange
- NumberingSystem()
: rnaml::NumberingSystem
- numberingSystems
: rnaml::Sequence, rnamlSEQUENCE
- NumberingTable()
: rnaml::NumberingTable
- object
: rnamlVOLUME, rnamlURL, rnamlUNMARSHALLER, rnamlTITLE, rnamlTAXONOMY, rnamlSURFACECONSTRAINT, rnamlSTRUCTURE, rnamlSTRANNOTATION, rnamlSSBASECOORD, rnamlSINGLESTRAND, rnamlSEQUENCE, rnamlSEQDATA, rnamlSEQANNOTATION, rnamlSEGMENT, rnamlSECONDARYSTRUCTUREDISPLAY, rnamlRNAML, rnamlREVISION, rnamlRESOLUTION, rnamlREFERENCE, rnamlPUBMEDID, rnamlPSEUDOKNOT, rnamlPROGVERSION, rnamlPROGRAM, rnamlPROGNAME, rnamlPERSON, rnamlPCDATA, rnamlPATH, rnamlPAGES, rnamlNUMBERINGTABLE, rnamlNUMBERINGSYSTEM, rnamlNUMBERINGRANGE, rnamlMOLECULEID, rnamlMOLECULECLASS, rnamlMOLECULE, rnamlMODIFICATION, rnamlMODELINFO, rnamlMODELID, rnamlMODEL, rnamlMETHOD, rnamlMARSHALLER, rnamlLENGTH, rnamlJOURNAL, rnamlISSUE, rnamlINTERACTIONS, rnamlIDENTITY, rnamlHELIXID, rnamlHELIX, rnamlFREEENERGY, rnamlFILE, rnamlEND, rnamlEDITOR, rnamlDISTANCECONSTRAINT, rnamlDATE, rnamlDATABASEENTRY, rnamlCONSENSUSMOLECULE, rnamlBOOKTITLE, rnamlBASETRIPLE, rnamlBASETORSIONANGLES, rnamlBASESTACK, rnamlBASEPAIRID, rnamlBASEPAIR, rnamlBASEID5P, rnamlBASEID3P, rnamlBASEID, rnamlBASECONFORMATION, rnamlBASE, rnamlAUTHOR, rnamlATOM, rnamlANALYSIS, rnamlALISEQUENCE, rnamlALIGNMENTID, rnamlALIGNMENT, rnamlAFFILIATION
- Object()
: rnaml::Object
- occupancy
: rnamlATOM
- operator=()
: rnaml::Volume, rnaml::Url, rnaml::Unmarshaller, rnaml::Title, rnaml::Taxonomy, rnaml::SurfaceConstraint, rnaml::Structure, rnaml::StrAnnotation, rnaml::SsBaseCoord, rnaml::SingleStrand, rnaml::Sequence, rnaml::SeqData, rnaml::SeqAnnotation, rnaml::Segment, rnaml::SecondaryStructureDisplay, rnaml::Rnaml, rnaml::Revision, rnaml::Resolution, rnaml::Reference, rnaml::PubmedId, rnaml::Pseudoknot, rnaml::ProgVersion, rnaml::Program, rnaml::ProgName, rnaml::Person, rnaml::PcData, rnaml::Path, rnaml::Pages, rnaml::Object, rnaml::NumberingTable, rnaml::NumberingSystem, rnaml::NumberingRange, rnaml::MoleculeId, rnaml::MoleculeClass, rnaml::Molecule, rnaml::Modification, rnaml::ModelInfo, rnaml::ModelId, rnaml::Model, rnaml::Method, rnaml::Marshaller, rnaml::Length, rnaml::Journal, rnaml::Issue, rnaml::Interactions, rnaml::Identity, rnaml::HelixId, rnaml::Helix, rnaml::FreeEnergy, rnaml::File, rnaml::End, rnaml::Editor, rnaml::DistanceConstraint, rnaml::Date, rnaml::DataBaseEntry, rnaml::ConsensusMolecule, rnaml::BookTitle, rnaml::BaseTriple, rnaml::BaseTorsionAngles, rnaml::BaseStack, rnaml::BasePairId, rnaml::BasePair, rnaml::BaseId5p, rnaml::BaseId3p, rnaml::BaseId, rnaml::BaseConformation, rnaml::Base, rnaml::Author, rnaml::Atom, rnaml::Analysis, rnaml::AliSequence, rnaml::AlignmentId, rnaml::Alignment, rnaml::Affiliation
- operator==()
: rnaml::Unmarshaller, rnaml::Object, rnaml::Marshaller
- order
: rnamlTAXONOMY
- os
: rnaml::OutputStream, xmlcpgPRINTSTREAM
- OutputStream()
: rnaml::OutputStream
- sddecl
: xmlcpgXMLDecl
- secondaryStructureDisplay
: rnamlMODEL
- SecondaryStructureDisplay()
: rnaml::SecondaryStructureDisplay
- segId
: rnamlATOM
- Segment()
: rnaml::Segment
- segment
: rnamlSINGLESTRAND
- segName
: rnamlSEGMENT
- SeqAnnotation()
: rnaml::SeqAnnotation
- seqAnnotation
: rnamlSEQUENCE
- SeqData()
: rnaml::SeqData
- seqData
: rnamlSEQUENCE, rnamlALISEQUENCE
- Sequence()
: rnaml::Sequence
- sequences
: rnaml::Molecule, rnamlMOLECULE
- serial
: rnamlATOM
- setAlignmentId()
: rnaml::ConsensusMolecule
- setAlpha()
: rnaml::BaseTorsionAngles
- setAltLoc()
: rnaml::Base
- setAtomType()
: rnaml::SurfaceConstraint, rnaml::Atom
- setAtomType1()
: rnaml::DistanceConstraint
- setAtomType2()
: rnaml::DistanceConstraint
- setBaseId()
: rnaml::SurfaceConstraint, rnaml::SsBaseCoord, rnaml::Modification, rnaml::BaseId5p, rnaml::BaseId3p, rnaml::BaseConformation
- setBaseId1()
: rnaml::DistanceConstraint, rnaml::BaseStack
- setBaseId2()
: rnaml::DistanceConstraint, rnaml::BaseStack
- setBaseId3p()
: rnaml::Helix, rnaml::BasePair
- setBaseId5p()
: rnaml::Segment, rnaml::Helix, rnaml::BasePair
- setBaseTorsionAngles()
: rnaml::BaseConformation
- setBaseType()
: rnaml::Base
- setBeta()
: rnaml::BaseTorsionAngles
- setBondOrientation()
: rnaml::BasePair
- setCharge()
: rnaml::Atom
- setChi()
: rnaml::BaseTorsionAngles
- setChild()
: rnaml::Path
- setChild1()
: rnaml::BaseTriple
- setChild2()
: rnaml::BaseTriple
- setChild3()
: rnaml::BaseTriple
- setCircular()
: rnaml::Sequence
- setClass()
: rnaml::Taxonomy
- setComment()
: rnaml::Object
- setCoordinates()
: rnaml::Atom
- setCStructure()
: rnaml::Structure, rnaml::StrAnnotation, rnaml::Sequence, rnaml::SeqAnnotation, rnaml::SecondaryStructureDisplay, rnaml::Rnaml, rnaml::Revision, rnaml::Reference, rnaml::Program, rnaml::Person, rnaml::OutputStream, rnaml::Object, rnaml::NumberingTable, rnaml::NumberingSystem, rnaml::MoleculeClass, rnaml::Molecule, rnaml::ModelInfo, rnaml::Model, rnaml::Interactions, rnaml::InputStream, rnaml::GZIPInputStream, rnaml::FileInputStream, rnaml::Base, rnaml::Analysis, rnaml::Alignment
- setDataBase()
: rnaml::DataBaseEntry
- setDay()
: rnaml::Date
- setDelta()
: rnaml::BaseTorsionAngles
- setDomain()
: rnaml::Taxonomy
- setEdge3p()
: rnaml::BasePair
- setEdge5p()
: rnaml::BasePair
- setElement()
: rnaml::Atom
- setEnd()
: rnaml::Segment, rnaml::NumberingRange
- setEndPage()
: rnaml::Pages
- setEntry()
: rnaml::DataBaseEntry
- setEpsilon()
: rnaml::BaseTorsionAngles
- setFamily()
: rnaml::Taxonomy
- setFirstName()
: rnaml::Person
- setFormatted()
: rnaml::Marshaller
- setGamma()
: rnaml::BaseTorsionAngles
- setGenus()
: rnaml::Taxonomy
- setGlycosyl()
: rnaml::BaseConformation
- setHelixId1()
: rnaml::Pseudoknot
- setHelixId2()
: rnaml::Pseudoknot
- setId()
: rnaml::Reference, rnaml::NumberingSystem, rnaml::Molecule, rnaml::Model, rnaml::Helix, rnaml::DataBaseEntry, rnaml::Analysis, rnaml::Alignment
- setIdentity()
: rnaml::MoleculeClass, rnaml::Molecule
- setInsertion()
: rnaml::Base
- setKingdom()
: rnaml::Taxonomy
- setLastName()
: rnaml::Person
- setLength()
: rnaml::Sequence, rnaml::NumberingTable, rnaml::Helix
- setMean()
: rnaml::DistanceConstraint
- setMethod()
: rnaml::ModelInfo
- setModelId()
: rnaml::BaseId
- setModelInfo()
: rnaml::Model
- setModifiedType()
: rnaml::Modification
- setMolecule()
: rnaml::ConsensusMolecule
- setMoleculeId()
: rnaml::BaseId, rnaml::AliSequence
- setMonth()
: rnaml::Date
- setName()
: rnaml::Identity
- setNu0()
: rnaml::BaseTorsionAngles
- setNu1()
: rnaml::BaseTorsionAngles
- setNu2()
: rnaml::BaseTorsionAngles
- setNu3()
: rnaml::BaseTorsionAngles
- setNu4()
: rnaml::BaseTorsionAngles
- setOccupancy()
: rnaml::Atom
- setOrder()
: rnaml::Taxonomy
- setPath()
: rnaml::DataBaseEntry
- setPerson()
: rnaml::Author
- setPhylum()
: rnaml::Taxonomy
- setPosition()
: rnaml::BaseId, rnaml::Base
- setPucker()
: rnaml::BaseConformation
- setRange()
: rnaml::DistanceConstraint
- setRef()
: rnaml::MoleculeId, rnaml::ModelId, rnaml::HelixId, rnaml::BasePairId, rnaml::AlignmentId
- setResolution()
: rnaml::ModelInfo
- setSecondaryStructureDisplay()
: rnaml::Model
- setSegId()
: rnaml::Atom
- setSegment()
: rnaml::SingleStrand
- setSegName()
: rnaml::Segment
- setSeqAnnotation()
: rnaml::Sequence
- setSeqData()
: rnaml::Sequence, rnaml::AliSequence
- setSerial()
: rnaml::Atom
- setSpecies()
: rnaml::Taxonomy
- setStart()
: rnaml::NumberingRange
- setStartPage()
: rnaml::Pages
- setStrain()
: rnaml::Taxonomy
- setStrand()
: rnaml::Sequence, rnaml::BaseId, rnaml::Base
- setStrandOrientation()
: rnaml::BasePair
- setStrAnnotation()
: rnaml::Model
- setStructure()
: rnaml::Molecule
- setSurfaceValue()
: rnaml::SurfaceConstraint
- setTaxonomy()
: rnaml::Identity
- setTempFactor()
: rnaml::Atom
- setType()
: rnaml::Molecule
- setUsedInFile()
: rnaml::NumberingSystem
- setValidating()
: rnaml::Unmarshaller, rnaml::Marshaller
- setValue()
: rnaml::Volume, rnaml::Url, rnaml::Title, rnaml::SeqData, rnaml::Resolution, rnaml::PubmedId, rnaml::ProgVersion, rnaml::ProgName, rnaml::PcData, rnaml::Method, rnaml::Length, rnaml::Journal, rnaml::Issue, rnaml::FreeEnergy, rnaml::File, rnaml::End, rnaml::Editor, rnaml::BookTitle, rnaml::Affiliation
- setVersion()
: rnaml::Rnaml
- setWeight()
: rnaml::DistanceConstraint
- setX()
: rnaml::SsBaseCoord, rnaml::Atom
- setY()
: rnaml::SsBaseCoord, rnaml::Atom
- setYear()
: rnaml::Date
- setZ()
: rnaml::Atom
- setZeta()
: rnaml::BaseTorsionAngles
- SingleStrand()
: rnaml::SingleStrand
- species
: rnamlTAXONOMY
- SsBaseCoord()
: rnaml::SsBaseCoord
- ssBaseCoords
: rnaml::SecondaryStructureDisplay, rnamlSECONDARYSTRUCTUREDISPLAY
- start
: rnamlNUMBERINGRANGE
- startPage
: rnamlPAGES
- str
: xmlcpgComment, xmlcpgCharData, xmlcpgString
- strain
: rnamlTAXONOMY
- strand
: rnamlSEQUENCE, rnamlBASEID, rnamlBASE
- strandOrientation
: rnamlBASEPAIR
- StrAnnotation()
: rnaml::StrAnnotation
- strAnnotation
: rnamlMODEL
- strAnnotations
: rnaml::Interactions, rnamlINTERACTIONS
- Structure()
: rnaml::Structure
- structure
: rnamlMOLECULE
- SurfaceConstraint()
: rnaml::SurfaceConstraint
- surfaceValue
: rnamlSURFACECONSTRAINT
- system
: xmlcpgPublicExternalID
- tag
: rnamlVOLUME, rnamlURL, rnamlUNMARSHALLER, rnamlTITLE, rnamlTAXONOMY, rnamlSURFACECONSTRAINT, rnamlSTRUCTURE, rnamlSTRANNOTATION, rnamlSSBASECOORD, rnamlSINGLESTRAND, rnamlSEQUENCE, rnamlSEQDATA, rnamlSEQANNOTATION, rnamlSEGMENT, rnamlSECONDARYSTRUCTUREDISPLAY, rnamlRNAML, rnamlREVISION, rnamlRESOLUTION, rnamlREFERENCE, rnamlPUBMEDID, rnamlPSEUDOKNOT, rnamlPROGVERSION, rnamlPROGRAM, rnamlPROGNAME, rnamlPERSON, rnamlPCDATA, rnamlPATH, rnamlPAGES, rnamlOBJECT, rnamlNUMBERINGTABLE, rnamlNUMBERINGSYSTEM, rnamlNUMBERINGRANGE, rnamlMOLECULEID, rnamlMOLECULECLASS, rnamlMOLECULE, rnamlMODIFICATION, rnamlMODELINFO, rnamlMODELID, rnamlMODEL, rnamlMETHOD, rnamlMARSHALLER, rnamlLENGTH, rnamlJOURNAL, rnamlISSUE, rnamlINTERACTIONS, rnamlIDENTITY, rnamlHELIXID, rnamlHELIX, rnamlFREEENERGY, rnamlFILE, rnamlEND, rnamlEDITOR, rnamlDISTANCECONSTRAINT, rnamlDATE, rnamlDATABASEENTRY, rnamlCONSENSUSMOLECULE, rnamlBOOKTITLE, rnamlBASETRIPLE, rnamlBASETORSIONANGLES, rnamlBASESTACK, rnamlBASEPAIRID, rnamlBASEPAIR, rnamlBASEID5P, rnamlBASEID3P, rnamlBASEID, rnamlBASECONFORMATION, rnamlBASE, rnamlAUTHOR, rnamlATOM, rnamlANALYSIS, rnamlALISEQUENCE, rnamlALIGNMENTID, rnamlALIGNMENT, rnamlAFFILIATION, xmlcpgMapIterator, xmlcpgMap, xmlcpgPublicID, xmlcpgNotationDecl, xmlcpgNDataDecl, xmlcpgPublicExternalID, xmlcpgSystemExternalID, xmlcpgExternalID, xmlcpgEntityValue, xmlcpgPEDecl, xmlcpgGEDecl, xmlcpgEntityRef, xmlcpgChar, xmlcpgAttValue, xmlcpgFixed, xmlcpgImplied, xmlcpgRequired, xmlcpgEnumeration, xmlcpgNotationType, xmlcpgNmTokens, xmlcpgNmToken, xmlcpgEntities, xmlcpgEntity, xmlcpgIdRefs, xmlcpgIdRef, xmlcpgId, xmlcpgAttDef, xmlcpgAttlistDecl, xmlcpgPCData, xmlcpgChildrenSeq, xmlcpgChildrenAlt, xmlcpgChildrenPlus, xmlcpgChildrenStar, xmlcpgChildrenOpt, xmlcpgAny, xmlcpgEmpty, xmlcpgElementDecl, xmlcpgContent, xmlcpgAttribute, xmlcpgElement, xmlcpgPEReference, xmlcpgDocTypeDecl, xmlcpgXMLDecl, xmlcpgProlog, xmlcpgCData, xmlcpgPI, xmlcpgComment, xmlcpgCharData, xmlcpgDocument, xmlcpgString, xmlcpgListIterator, xmlcpgIterator, xmlcpgList, xmlcpgPair, xmlcpgObject, xmlcpgMAPENTRY, xmlcpgPRINTSTREAM, xmlcpgINPUTSTREAM, xmlcpgGZIPOUTPUTSTREAM, xmlcpgGZIPINPUTSTREAM, xmlcpgFILEOUTPUTSTREAM, xmlcpgFILEINPUTSTREAM
- tail
: xmlcpgPair
- taxonomy
: rnamlIDENTITY
- Taxonomy()
: rnaml::Taxonomy
- tempFactor
: rnamlATOM
- Title()
: rnaml::Title
- toXML()
: rnaml::Object
- toXMLDocument()
: rnaml::Rnaml
- type
: rnamlMOLECULE
- validating
: rnamlUNMARSHALLER, rnamlMARSHALLER
- value
: rnamlVOLUME, rnamlURL, rnamlTITLE, rnamlSEQDATA, rnamlRESOLUTION, rnamlPUBMEDID, rnamlPROGVERSION, rnamlPROGNAME, rnamlPCDATA, rnamlMETHOD, rnamlLENGTH, rnamlJOURNAL, rnamlISSUE, rnamlFREEENERGY, rnamlFILE, rnamlEND, rnamlEDITOR, rnamlBOOKTITLE, rnamlAFFILIATION, xmlcpgEntityValue, xmlcpgAttribute, xmlcpgMAPENTRY
- values
: rnaml::NumberingTable, rnamlNUMBERINGTABLE
- version
: rnamlRNAML, xmlcpgXMLDecl
- Volume()
: rnaml::Volume
Generated on Tue Nov 11 14:59:53 2003 for xmlcpg by
1.2.18