00001 /* -*- Mode: C -*- 00002 * base.h 00003 * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique 00004 * Université de Montréal. 00005 * Author : Patrick Charbonneau 00006 * Created On : Wed Sep 12 16:48:15 2003 00007 * $Revision: 1.7 $ 00008 * $Id: base.h,v 1.7 2003/10/01 13:06:46 larosem Exp $ 00009 * 00010 * This file is part of xmlcpg. 00011 * 00012 * xmlcpg is free software; you can redistribute it and/or modify it under 00013 * the terms of the GNU Lesser General Public License as published by the Free 00014 * Software Foundation; either version 2 of the License, or (at your option) 00015 * any later version. 00016 * 00017 * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 * more details. 00021 * 00022 * You should have received a copy of the GNU Lesser General Public License 00023 * along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 */ 00026 00027 00028 #ifndef _rnaml_base_h_ 00029 #define _rnaml_base_h_ 00030 00031 #include "atom.h" 00032 #include "object.h" 00033 #include "xmlcpg.h" 00034 00035 00036 00040 typedef struct rnamlBASE rnamlBase; 00041 00046 rnamlBase* rnamlnewBase (); 00047 00053 rnamlBase* rnamlcloneBase (const rnamlBase *base); 00054 00059 void rnamldeleteBase (rnamlBase *base); 00060 00066 int rnamlisBase (const rnamlObject *obj); 00067 00074 int rnamlequalsBase (const rnamlBase *left, const rnamlBase *right); 00075 00081 const char* rnamlgetBaseStrand (const rnamlBase *base); 00082 00089 void rnamlsetBaseStrand (rnamlBase *base, const char *strand); 00090 00096 int rnamlgetBasePosition (const rnamlBase *base); 00097 00103 void rnamlsetBasePosition (rnamlBase *base, int position); 00104 00110 const char* rnamlgetBaseBaseType (const rnamlBase *base); 00111 00118 void rnamlsetBaseBaseType (rnamlBase *base, const char *baseType); 00119 00125 char rnamlgetBaseAltLoc (const rnamlBase *base); 00126 00132 void rnamlsetBaseAltLoc (rnamlBase *base, char altLoc); 00133 00139 char rnamlgetBaseInsertion (const rnamlBase *base); 00140 00146 void rnamlsetBaseInsertion (rnamlBase *base, char insertion); 00147 00153 void rnamladdBaseAtom (rnamlBase *base, rnamlAtom *atom); 00154 00160 xmlcpgList* rnamlgetBaseAtoms (rnamlBase *base); 00161 00168 xmlcpgObject* rnamltoXMLBase (const rnamlBase *base); 00169 00170 #endif 00171