#include "alisequence.h"#include "object.h"#include "xmlcpg.h"Go to the source code of this file.
Typedefs | |
| typedef rnamlALIGNMENT | rnamlAlignment |
| Rnaml structure containing the alignment informations. | |
Functions | |
| rnamlAlignment * | rnamlnewAlignment () |
| Creates a new rnamlAlignment structure. | |
| rnamlAlignment * | rnamlcloneAlignment (const rnamlAlignment *alignment) |
| Clones a rnamlAlignment struture. | |
| void | rnamldeleteAlignment (rnamlAlignment *alignment) |
| Frees the rnamlAlignment structure. | |
| int | rnamlisAlignment (const rnamlObject *obj) |
| Tells wheter the object is a rnamlAlignment. | |
| int | rnamlequalsAlignment (const rnamlAlignment *left, const rnamlAlignment *right) |
| Tells if left and right are equals. | |
| const char * | rnamlgetAlignmentId (const rnamlAlignment *alignment) |
| Gets the alignment id. | |
| void | rnamlsetAlignmentId (rnamlAlignment *alignment, const char *id) |
| Sets the alignment id. | |
| void | rnamladdAlignmentAliSequence (rnamlAlignment *alignment, rnamlAliSequence *aliSequence) |
| Adds a aliSequence into a alignment. | |
| xmlcpgList * | rnamlgetAlignmentAliSequences (rnamlAlignment *alignment) |
| Gets the alignment's aliSequence list. | |
| xmlcpgObject * | rnamltoXMLAlignment (const rnamlAlignment *alignment) |
| Translates the rnamlAlignment structure into a xmlcpgElement conforming to the RNAML standard. | |
|
|
Rnaml structure containing the alignment informations.
|
|
||||||||||||
|
Adds a aliSequence into a alignment.
|
|
|
Clones a rnamlAlignment struture.
|
|
|
Frees the rnamlAlignment structure.
|
|
||||||||||||
|
Tells if left and right are equals.
|
|
|
Gets the alignment's aliSequence list.
|
|
|
Gets the alignment id.
|
|
|
Tells wheter the object is a rnamlAlignment.
|
|
|
Creates a new rnamlAlignment structure.
|
|
||||||||||||
|
Sets the alignment id. The previous alignment id is freed and a copy of id is generated.
|
|
|
Translates the rnamlAlignment structure into a xmlcpgElement conforming to the RNAML standard.
|
1.2.18