#include "alisequence.h"
#include "object.h"
#include "xmlcpg.h"
Go to the source code of this file.
Typedefs | |
typedef rnamlALIGNMENT | rnamlAlignment |
Rnaml structure containing the alignment informations. | |
Functions | |
rnamlAlignment * | rnamlnewAlignment () |
Creates a new rnamlAlignment structure. | |
rnamlAlignment * | rnamlcloneAlignment (const rnamlAlignment *alignment) |
Clones a rnamlAlignment struture. | |
void | rnamldeleteAlignment (rnamlAlignment *alignment) |
Frees the rnamlAlignment structure. | |
int | rnamlisAlignment (const rnamlObject *obj) |
Tells wheter the object is a rnamlAlignment. | |
int | rnamlequalsAlignment (const rnamlAlignment *left, const rnamlAlignment *right) |
Tells if left and right are equals. | |
const char * | rnamlgetAlignmentId (const rnamlAlignment *alignment) |
Gets the alignment id. | |
void | rnamlsetAlignmentId (rnamlAlignment *alignment, const char *id) |
Sets the alignment id. | |
void | rnamladdAlignmentAliSequence (rnamlAlignment *alignment, rnamlAliSequence *aliSequence) |
Adds a aliSequence into a alignment. | |
xmlcpgList * | rnamlgetAlignmentAliSequences (rnamlAlignment *alignment) |
Gets the alignment's aliSequence list. | |
xmlcpgObject * | rnamltoXMLAlignment (const rnamlAlignment *alignment) |
Translates the rnamlAlignment structure into a xmlcpgElement conforming to the RNAML standard. |
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Rnaml structure containing the alignment informations.
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Adds a aliSequence into a alignment.
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Clones a rnamlAlignment struture.
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Frees the rnamlAlignment structure.
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Tells if left and right are equals.
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Gets the alignment's aliSequence list.
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Gets the alignment id.
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Tells wheter the object is a rnamlAlignment.
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Creates a new rnamlAlignment structure.
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Sets the alignment id. The previous alignment id is freed and a copy of id is generated.
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Translates the rnamlAlignment structure into a xmlcpgElement conforming to the RNAML standard.
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