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alisequence.h

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00001 /*                               -*- Mode: C -*- 
00002  * alisequence.h
00003  * Copyright © 2003 Laboratoire de Biologie Informatique et Théorique
00004  *                  Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.1 $
00008  * $Id: alisequence.h,v 1.1 2003/10/01 13:05:27 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_alisequence_h_
00029 #define _rnaml_alisequence_h_
00030 
00031 #include "moleculeid.h"
00032 #include "seqdata.h"
00033 #include "object.h"
00034 #include "xmlcpg.h"
00035 
00036 
00037 
00041 typedef struct rnamlALISEQUENCE rnamlAliSequence;
00042 
00047 rnamlAliSequence* rnamlnewAliSequence ();
00048 
00054 rnamlAliSequence* rnamlcloneAliSequence (const rnamlAliSequence *alisequence);
00055 
00060 void rnamldeleteAliSequence (rnamlAliSequence *alisequence);
00061 
00067 int rnamlisAliSequence (const rnamlObject *obj);
00068 
00075 int rnamlequalsAliSequence (const rnamlAliSequence *left, const rnamlAliSequence *right);
00076 
00083 rnamlMoleculeId* rnamlgetAliSequenceMoleculeId (rnamlAliSequence *aliSequence);
00084 
00090 void rnamlsetAliSequenceMoleculeId (rnamlAliSequence *aliSequence, rnamlMoleculeId *moleculeId);
00091 
00098 rnamlSeqData* rnamlgetAliSequenceSeqData (rnamlAliSequence *aliSequence);
00099 
00105 void rnamlsetAliSequenceSeqData (rnamlAliSequence *aliSequence, rnamlSeqData *seqData);
00106 
00113 xmlcpgObject* rnamltoXMLAliSequence (const rnamlAliSequence *aliSequence);
00114 
00115 #endif
00116 

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