00001 /* -*- Mode: C -*- 00002 * alisequence.h 00003 * Copyright © 2003 Laboratoire de Biologie Informatique et Théorique 00004 * Université de Montréal. 00005 * Author : Patrick Charbonneau 00006 * Created On : Wed Sep 12 16:48:15 2003 00007 * $Revision: 1.1 $ 00008 * $Id: alisequence.h,v 1.1 2003/10/01 13:05:27 larosem Exp $ 00009 * 00010 * This file is part of xmlcpg. 00011 * 00012 * xmlcpg is free software; you can redistribute it and/or modify it under 00013 * the terms of the GNU Lesser General Public License as published by the Free 00014 * Software Foundation; either version 2 of the License, or (at your option) 00015 * any later version. 00016 * 00017 * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 * more details. 00021 * 00022 * You should have received a copy of the GNU Lesser General Public License 00023 * along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 */ 00026 00027 00028 #ifndef _rnaml_alisequence_h_ 00029 #define _rnaml_alisequence_h_ 00030 00031 #include "moleculeid.h" 00032 #include "seqdata.h" 00033 #include "object.h" 00034 #include "xmlcpg.h" 00035 00036 00037 00041 typedef struct rnamlALISEQUENCE rnamlAliSequence; 00042 00047 rnamlAliSequence* rnamlnewAliSequence (); 00048 00054 rnamlAliSequence* rnamlcloneAliSequence (const rnamlAliSequence *alisequence); 00055 00060 void rnamldeleteAliSequence (rnamlAliSequence *alisequence); 00061 00067 int rnamlisAliSequence (const rnamlObject *obj); 00068 00075 int rnamlequalsAliSequence (const rnamlAliSequence *left, const rnamlAliSequence *right); 00076 00083 rnamlMoleculeId* rnamlgetAliSequenceMoleculeId (rnamlAliSequence *aliSequence); 00084 00090 void rnamlsetAliSequenceMoleculeId (rnamlAliSequence *aliSequence, rnamlMoleculeId *moleculeId); 00091 00098 rnamlSeqData* rnamlgetAliSequenceSeqData (rnamlAliSequence *aliSequence); 00099 00105 void rnamlsetAliSequenceSeqData (rnamlAliSequence *aliSequence, rnamlSeqData *seqData); 00106 00113 xmlcpgObject* rnamltoXMLAliSequence (const rnamlAliSequence *aliSequence); 00114 00115 #endif 00116