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Mc-Sym is a software that builds RNA 3-D
structures using coordinates and relations between
residues extracted from X-ray crystallography and
NMR found in the RCSB Protein Data Bank and the
Rutgers Nucleic Acid Database
and from theoretical models. Constraints can be
applied to the building procedure to ensure that
the generated models are valid. The RNA structures
properties and constraints are entered in a script
or interactively within the mcsym
interpreter.
Mc-Sym 3.3.2 package contains:
- mcsym The modeling program;
- mcsym database The binary sets of
structure conformation and translation. You can
get the latest version of the database;
- mcrms computes the rmsd between structures, aligns structures;
- toleap / fromleap conversion
tools between mcsym and Amber / leap pdb formats.
Mc-Sym 3.3.2 is currently available for the following platforms:
- Linux glibc 2.3
- IRIX 6.5
- SunOS 5.9
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You can download and test a demo version of Mc-Sym. The demo
limits the size of the RNA sequence to 9 nucleotides.
Link to the Documentation Project
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