00001 /* -*- Mode: C -*- 00002 * molecule.h 00003 * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique 00004 * Université de Montréal. 00005 * Author : Patrick Charbonneau 00006 * Created On : Wed Sep 12 16:48:15 2003 00007 * $Revision: 1.5 $ 00008 * $Id: molecule.h,v 1.5 2003/10/01 13:11:20 larosem Exp $ 00009 * 00010 * This file is part of xmlcpg. 00011 * 00012 * xmlcpg is free software; you can redistribute it and/or modify it under 00013 * the terms of the GNU Lesser General Public License as published by the Free 00014 * Software Foundation; either version 2 of the License, or (at your option) 00015 * any later version. 00016 * 00017 * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 * more details. 00021 * 00022 * You should have received a copy of the GNU Lesser General Public License 00023 * along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 */ 00026 00027 00028 #ifndef _rnaml_molecule_h_ 00029 #define _rnaml_molecule_h_ 00030 00031 #include "identity.h" 00032 #include "sequence.h" 00033 #include "structure.h" 00034 #include "object.h" 00035 #include "xmlcpg.h" 00036 00037 00038 00042 typedef struct rnamlMOLECULE rnamlMolecule; 00043 00048 rnamlMolecule* rnamlnewMolecule (); 00049 00055 rnamlMolecule* rnamlcloneMolecule (const rnamlMolecule *molecule); 00056 00061 void rnamldeleteMolecule (rnamlMolecule *molecule); 00062 00068 int rnamlisMolecule (const rnamlObject *obj); 00069 00076 int rnamlequalsMolecule (const rnamlMolecule *left, const rnamlMolecule *right); 00077 00084 const char* rnamlgetMoleculeId (const rnamlMolecule *molecule); 00085 00092 void rnamlsetMoleculeId (rnamlMolecule *molecule, const char *id); 00093 00099 const char* rnamlgetMoleculeType (const rnamlMolecule *molecule); 00100 00106 void rnamlsetMoleculeType (rnamlMolecule *molecule, const char *type); 00107 00114 rnamlIdentity* rnamlgetMoleculeIdentity (rnamlMolecule *molecule); 00115 00121 void rnamlsetMoleculeIdentity (rnamlMolecule *molecule, rnamlIdentity *identity); 00122 00128 void rnamladdMoleculeSequence (rnamlMolecule *molecule, rnamlSequence *sequence); 00129 00135 xmlcpgList* rnamlgetMoleculeSequences (rnamlMolecule *molecule); 00136 00143 rnamlStructure* rnamlgetMoleculeStructure (rnamlMolecule *molecule); 00144 00150 void rnamlsetMoleculeStructure (rnamlMolecule *molecule, rnamlStructure *structure); 00151 00158 xmlcpgObject* rnamltoXMLMolecule (const rnamlMolecule *molecule); 00159 00160 #endif 00161