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molecule.h

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00001 /*                               -*- Mode: C -*- 
00002  * molecule.h
00003  * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique
00004  *                     Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.5 $
00008  * $Id: molecule.h,v 1.5 2003/10/01 13:11:20 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_molecule_h_
00029 #define _rnaml_molecule_h_
00030 
00031 #include "identity.h"
00032 #include "sequence.h"
00033 #include "structure.h"
00034 #include "object.h"
00035 #include "xmlcpg.h"
00036 
00037 
00038 
00042 typedef struct rnamlMOLECULE rnamlMolecule;
00043 
00048 rnamlMolecule* rnamlnewMolecule ();
00049 
00055 rnamlMolecule* rnamlcloneMolecule (const rnamlMolecule *molecule);
00056 
00061 void rnamldeleteMolecule (rnamlMolecule *molecule);
00062 
00068 int rnamlisMolecule (const rnamlObject *obj);
00069 
00076 int rnamlequalsMolecule (const rnamlMolecule *left, const rnamlMolecule *right);
00077 
00084 const char* rnamlgetMoleculeId (const rnamlMolecule *molecule);
00085 
00092 void rnamlsetMoleculeId (rnamlMolecule *molecule, const char *id);
00093 
00099 const char* rnamlgetMoleculeType (const rnamlMolecule *molecule);
00100 
00106 void rnamlsetMoleculeType (rnamlMolecule *molecule, const char *type);
00107 
00114 rnamlIdentity* rnamlgetMoleculeIdentity (rnamlMolecule *molecule);
00115 
00121 void rnamlsetMoleculeIdentity (rnamlMolecule *molecule, rnamlIdentity *identity);
00122 
00128 void rnamladdMoleculeSequence (rnamlMolecule *molecule, rnamlSequence *sequence);
00129 
00135 xmlcpgList* rnamlgetMoleculeSequences (rnamlMolecule *molecule);
00136 
00143 rnamlStructure* rnamlgetMoleculeStructure (rnamlMolecule *molecule);
00144 
00150 void rnamlsetMoleculeStructure (rnamlMolecule *molecule, rnamlStructure *structure);
00151 
00158 xmlcpgObject* rnamltoXMLMolecule (const rnamlMolecule *molecule);
00159 
00160 #endif
00161 

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