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helix.h

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00001 /*                               -*- Mode: C -*- 
00002  * helix.h
00003  * Copyright © 2003 Laboratoire de Biologie Informatique et Théorique
00004  *                  Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.2 $
00008  * $Id: helix.h,v 1.2 2003/10/18 00:18:46 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_helix_h_
00029 #define _rnaml_helix_h_
00030 
00031 #include "baseid5p.h"
00032 #include "baseid3p.h"
00033 #include "length.h"
00034 #include "object.h"
00035 #include "xmlcpg.h"
00036 
00037 
00038 
00042 typedef struct rnamlHELIX rnamlHelix;
00043 
00048 rnamlHelix* rnamlnewHelix ();
00049 
00055 rnamlHelix* rnamlcloneHelix (const rnamlHelix *helix);
00056 
00061 void rnamldeleteHelix (rnamlHelix *helix);
00062 
00068 int rnamlisHelix (const rnamlObject *obj);
00069 
00076 int rnamlequalsHelix (const rnamlHelix *left, const rnamlHelix *right);
00077 
00084 const char* rnamlgetHelixId (const rnamlHelix *helix);
00085 
00092 void rnamlsetHelixId (rnamlHelix *helix, const char *id);
00093 
00100 rnamlBaseId5p* rnamlgetHelixBaseId5p (rnamlHelix *helix);
00101 
00107 void rnamlsetHelixBaseId5p (rnamlHelix *helix, rnamlBaseId5p *baseId5p);
00108 
00115 rnamlBaseId3p* rnamlgetHelixBaseId3p (rnamlHelix *helix);
00116 
00122 void rnamlsetHelixBaseId3p (rnamlHelix *helix, rnamlBaseId3p *baseId3p);
00123 
00129 rnamlLength* rnamlgetHelixLength (const rnamlHelix *helix);
00130 
00136 void rnamlsetHelixLength (rnamlHelix *helix, rnamlLength *length);
00137 
00144 xmlcpgObject* rnamltoXMLHelix (const rnamlHelix *helix);
00145 
00146 #endif
00147 

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