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basepair.h

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00001 /*                               -*- Mode: C -*- 
00002  * basepair.h
00003  * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique
00004  *                     Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.5 $
00008  * $Id: basepair.h,v 1.5 2003/10/01 13:07:24 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_basepair_h_
00029 #define _rnaml_basepair_h_
00030 
00031 #include "baseid5p.h"
00032 #include "baseid3p.h"
00033 #include "object.h"
00034 #include "xmlcpg.h"
00035 
00036 
00037 
00041 typedef struct rnamlBASEPAIR rnamlBasePair;
00042 
00047 rnamlBasePair* rnamlnewBasePair ();
00048 
00054 rnamlBasePair* rnamlcloneBasePair (const rnamlBasePair *basepair);
00055 
00060 void rnamldeleteBasePair (rnamlBasePair *basepair);
00061 
00067 int rnamlisBasePair (const rnamlObject *obj);
00068 
00075 int rnamlequalsBasePair (const rnamlBasePair *left, const rnamlBasePair *right);
00076 
00083 rnamlBaseId5p* rnamlgetBasePairBaseId5p (rnamlBasePair *basePair);
00084 
00090 void rnamlsetBasePairBaseId5p (rnamlBasePair *basePair, rnamlBaseId5p *baseId5p);
00091 
00098 rnamlBaseId3p* rnamlgetBasePairBaseId3p (rnamlBasePair *basePair);
00099 
00105 void rnamlsetBasePairBaseId3p (rnamlBasePair *basePair, rnamlBaseId3p *baseId3p);
00106 
00112 const char* rnamlgetBasePairEdge5p (const rnamlBasePair *basePair);
00113 
00120 void rnamlsetBasePairEdge5p (rnamlBasePair *basePair, const char *edge5p);
00121 
00127 const char* rnamlgetBasePairEdge3p (const rnamlBasePair *basePair);
00128 
00135 void rnamlsetBasePairEdge3p (rnamlBasePair *basePair, const char *edge3p);
00136 
00142 const char* rnamlgetBasePairBondOrientation (const rnamlBasePair *basePair);
00143 
00150 void rnamlsetBasePairBondOrientation (rnamlBasePair *basePair, const char *bondOrientation);
00151 
00157 const char* rnamlgetBasePairStrandOrientation (const rnamlBasePair *basePair);
00158 
00165 void rnamlsetBasePairStrandOrientation (rnamlBasePair *basePair, const char *strandOrientation);
00166 
00173 xmlcpgObject* rnamltoXMLBasePair (const rnamlBasePair *basePair);
00174 
00175 #endif
00176 

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