00001 /* -*- Mode: C++ -*- 00002 * Taxonomy.h 00003 * Copyright © 2003 Laboratoire de Biologie Informatique et Théorique 00004 * Université de Montréal. 00005 * Author : Patrick Charbonneau 00006 * Created On : Wed Sep 12 16:48:15 2003 00007 * $Revision: 1.2 $ 00008 * $Id: Taxonomy.h,v 1.2 2003/10/18 00:25:45 larosem Exp $ 00009 * 00010 * This file is part of xmlcpg. 00011 * 00012 * xmlcpg is free software; you can redistribute it and/or modify it under 00013 * the terms of the GNU Lesser General Public License as published by the Free 00014 * Software Foundation; either version 2 of the License, or (at your option) 00015 * any later version. 00016 * 00017 * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 * more details. 00021 * 00022 * You should have received a copy of the GNU Lesser General Public License 00023 * along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 */ 00026 00027 00028 #ifndef _rnaml_Taxonomy_h_ 00029 #define _rnaml_Taxonomy_h_ 00030 00031 extern "C" { 00032 #include "object.h" 00033 #include "taxonomy.h" 00034 } 00035 00036 #include "Object.h" 00037 00038 00039 00040 namespace rnaml 00041 { 00042 class Taxonomy : public Object 00043 { 00044 00045 public: 00046 00047 // LIFECYCLE ------------------------------------------------------------ 00048 00052 Taxonomy () : Object ((rnamlObject*) rnamlnewTaxonomy ()) { } 00053 00058 Taxonomy (const Taxonomy &right) : Object (right) { } 00059 00064 Taxonomy* clone () const { return new Taxonomy (*this); } 00065 00069 virtual ~Taxonomy () { } 00070 00071 // OPERATORS ------------------------------------------------------------ 00072 00078 Taxonomy& operator= (const Taxonomy &right); 00079 00080 // ACCESS --------------------------------------------------------------- 00081 00086 const char* getDomain () const { return rnamlgetTaxonomyDomain ((const rnamlTaxonomy*) getCStructure ()); } 00087 00092 void setDomain (const char *domain) { rnamlsetTaxonomyDomain ((rnamlTaxonomy*) getCStructure (), domain); } 00093 00098 const char* getKingdom () const { return rnamlgetTaxonomyKingdom ((const rnamlTaxonomy*) getCStructure ()); } 00099 00104 void setKingdom (const char *kingdom) { rnamlsetTaxonomyKingdom ((rnamlTaxonomy*) getCStructure (), kingdom); } 00105 00110 const char* getPhylum () const { return rnamlgetTaxonomyPhylum ((const rnamlTaxonomy*) getCStructure ()); } 00111 00116 void setPhylum (const char *phylum) { rnamlsetTaxonomyPhylum ((rnamlTaxonomy*) getCStructure (), phylum); } 00117 00122 const char* getClass () const { return rnamlgetTaxonomyClass ((const rnamlTaxonomy*) getCStructure ()); } 00123 00128 void setClass (const char *clazz) { rnamlsetTaxonomyClass ((rnamlTaxonomy*) getCStructure (), clazz); } 00129 00134 const char* getOrder () const { return rnamlgetTaxonomyOrder ((rnamlTaxonomy*) getCStructure ()); } 00135 00140 void setOrder (const char *order) { rnamlsetTaxonomyOrder ((rnamlTaxonomy*) getCStructure (), order); } 00141 00146 const char* getFamily () const { return rnamlgetTaxonomyFamily ((const rnamlTaxonomy*) getCStructure ()); } 00147 00152 void setFamily (const char *family) { rnamlsetTaxonomyFamily ((rnamlTaxonomy*) getCStructure (), family); } 00153 00158 const char* getGenus () const { return rnamlgetTaxonomyGenus ((const rnamlTaxonomy*) getCStructure ()); } 00159 00164 void setGenus (const char *genus) { rnamlsetTaxonomyGenus ((rnamlTaxonomy*) getCStructure (), genus); } 00165 00170 const char* getSpecies () const { return rnamlgetTaxonomySpecies ((const rnamlTaxonomy*) getCStructure ()); } 00171 00176 void setSpecies (const char *species) { rnamlsetTaxonomySpecies ((rnamlTaxonomy*) getCStructure (), species); } 00177 00182 const char* getStrain () const { return rnamlgetTaxonomyStrain ((const rnamlTaxonomy*) getCStructure ()); } 00183 00188 void setStrain (const char *strain) { rnamlsetTaxonomyStrain ((rnamlTaxonomy*) getCStructure (), strain); } 00189 00190 // METHODS -------------------------------------------------------------- 00191 00192 // I/O ----------------------------------------------------------------- 00193 00194 }; 00195 } 00196 00197 #endif