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Taxonomy.h

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00001 /*                               -*- Mode: C++ -*- 
00002  * Taxonomy.h
00003  * Copyright © 2003 Laboratoire de Biologie Informatique et Théorique
00004  *                  Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.2 $
00008  * $Id: Taxonomy.h,v 1.2 2003/10/18 00:25:45 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_Taxonomy_h_
00029 #define _rnaml_Taxonomy_h_
00030 
00031 extern "C" {
00032 #include "object.h"
00033 #include "taxonomy.h"
00034 }
00035 
00036 #include "Object.h"
00037 
00038 
00039 
00040 namespace rnaml
00041 {
00042   class Taxonomy : public Object
00043   {
00044     
00045   public:
00046 
00047     // LIFECYCLE ------------------------------------------------------------
00048 
00052     Taxonomy () : Object ((rnamlObject*) rnamlnewTaxonomy ()) { }
00053 
00058     Taxonomy (const Taxonomy &right) : Object (right) { }
00059 
00064     Taxonomy* clone () const { return new Taxonomy (*this); }
00065 
00069     virtual ~Taxonomy () { }
00070 
00071     // OPERATORS ------------------------------------------------------------
00072 
00078     Taxonomy& operator= (const Taxonomy &right);
00079 
00080     // ACCESS ---------------------------------------------------------------
00081 
00086     const char* getDomain () const { return rnamlgetTaxonomyDomain ((const rnamlTaxonomy*) getCStructure ()); }
00087 
00092     void setDomain (const char *domain) { rnamlsetTaxonomyDomain ((rnamlTaxonomy*) getCStructure (), domain); }
00093 
00098     const char* getKingdom () const { return rnamlgetTaxonomyKingdom ((const rnamlTaxonomy*) getCStructure ()); }
00099 
00104     void setKingdom (const char *kingdom) { rnamlsetTaxonomyKingdom ((rnamlTaxonomy*) getCStructure (), kingdom); }
00105 
00110     const char* getPhylum () const { return rnamlgetTaxonomyPhylum ((const rnamlTaxonomy*) getCStructure ()); }
00111 
00116     void setPhylum (const char *phylum) { rnamlsetTaxonomyPhylum ((rnamlTaxonomy*) getCStructure (), phylum); }
00117 
00122     const char* getClass () const { return rnamlgetTaxonomyClass ((const rnamlTaxonomy*) getCStructure ()); }
00123 
00128     void setClass (const char *clazz) { rnamlsetTaxonomyClass ((rnamlTaxonomy*) getCStructure (), clazz); }
00129 
00134     const char* getOrder () const { return rnamlgetTaxonomyOrder ((rnamlTaxonomy*) getCStructure ()); }
00135 
00140     void setOrder (const char *order) { rnamlsetTaxonomyOrder ((rnamlTaxonomy*) getCStructure (), order); }
00141 
00146     const char* getFamily () const { return rnamlgetTaxonomyFamily ((const rnamlTaxonomy*) getCStructure ()); }
00147 
00152     void setFamily (const char *family) { rnamlsetTaxonomyFamily ((rnamlTaxonomy*) getCStructure (), family); }
00153 
00158     const char* getGenus () const { return rnamlgetTaxonomyGenus ((const rnamlTaxonomy*) getCStructure ()); }
00159 
00164     void setGenus (const char *genus) { rnamlsetTaxonomyGenus ((rnamlTaxonomy*) getCStructure (), genus); }
00165 
00170     const char* getSpecies () const { return rnamlgetTaxonomySpecies ((const rnamlTaxonomy*) getCStructure ()); }
00171 
00176     void setSpecies (const char *species) { rnamlsetTaxonomySpecies ((rnamlTaxonomy*) getCStructure (), species); }
00177 
00182     const char* getStrain () const { return rnamlgetTaxonomyStrain ((const rnamlTaxonomy*) getCStructure ()); }
00183 
00188     void setStrain (const char *strain) { rnamlsetTaxonomyStrain ((rnamlTaxonomy*) getCStructure (), strain); }
00189 
00190     // METHODS --------------------------------------------------------------
00191 
00192     // I/O  -----------------------------------------------------------------
00193 
00194   };
00195 }
00196 
00197 #endif

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