00001 // -*- Mode: C++ -*- 00002 // Rnaml.h 00003 // Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique 00004 // Université de Montréal. 00005 // Author : Mélissa Jourdain 00006 // Created On : Mon Aug 26 15:43:45 2002 00007 // $Revision: 1.11 $ 00008 // $Id: Rnaml.h,v 1.11 2003/10/18 00:24:56 larosem Exp $ 00009 // 00010 // This file is part of xmlcpg. 00011 // 00012 // xmlcpg is free software; you can redistribute it and/or modify it under 00013 // the terms of the GNU Lesser General Public License as published by the Free 00014 // Software Foundation; either version 2 of the License, or (at your option) 00015 // any later version. 00016 // 00017 // xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 // WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 // FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 // more details. 00021 // 00022 // You should have received a copy of the GNU Lesser General Public License 00023 // along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 // 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 00026 00027 #ifndef _rnaml_Rnaml_h_ 00028 #define _rnaml_Rnaml_h_ 00029 00030 #include <vector> 00031 00032 extern "C" { 00033 #include "object.h" 00034 #include "rnaml.h" 00035 #include "xmlcpg.h" 00036 } 00037 00038 #include "Object.h" 00039 00040 00041 00042 namespace rnaml 00043 { 00044 class Molecule; 00045 00046 00047 00048 class Rnaml : public Object 00049 { 00053 std::vector< Object* > children; 00054 00055 public: 00056 00057 // LIFECYCLE ------------------------------------------------------------ 00058 00064 Rnaml (const char* v = 0); 00065 00070 Rnaml (const Rnaml &right); 00071 00076 Rnaml* clone () const { return new Rnaml (*this); } 00077 00081 virtual ~Rnaml (); 00082 00083 // OPERATORS ------------------------------------------------------------ 00084 00090 Rnaml& operator= (const Rnaml &right); 00091 00092 // ACCESS --------------------------------------------------------------- 00093 00098 const char* getVersion () const { return rnamlgetRnamlVersion ((const rnamlRnaml*) getCStructure ()); } 00099 00104 void setVersion (const char *version) { rnamlsetRnamlVersion ((rnamlRnaml*) getCStructure (), version); } 00105 00110 std::vector< Object* >& getChildren () { return children; } 00111 00116 void addChild (Object *obj); 00117 00122 virtual void setCStructure (rnamlObject *obj); 00123 00124 // METHODS -------------------------------------------------------------- 00125 00130 xmlcpgDocument* toXMLDocument () const { return rnamltoXMLDocument ((const rnamlRnaml*) getCStructure ()); } 00131 00132 // I/O ----------------------------------------------------------------- 00133 00134 }; 00135 } 00136 00137 #endif