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Model.h

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00001 /*                               -*- Mode: C++ -*- 
00002  * Model.h
00003  * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique
00004  *                  Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.11 $
00008  * $Id: Model.h,v 1.11 2003/10/18 00:23:14 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_Model_h_
00029 #define _rnaml_Model_h_
00030 
00031 #include <vector>
00032 
00033 extern "C" {
00034 #include "model.h"
00035 #include "object.h"
00036 }
00037 
00038 #include "Object.h"
00039 
00040 
00041 
00042 namespace rnaml
00043 {
00044   class Base;
00045   class ModelInfo;
00046   class SecondaryStructureDisplay;
00047   class StrAnnotation;
00048 
00049 
00050 
00051   class Model : public Object
00052   {
00056     std::vector< Base* > bases;
00057 
00058   public:
00059 
00060     // LIFECYCLE ------------------------------------------------------------
00061 
00065     Model () : Object ((rnamlObject*) rnamlnewModel ()) { }
00066 
00071     Model (const Model &right);
00072 
00077     Model* clone () const { return new Model (*this); }
00078 
00082     virtual ~Model ();
00083 
00084     // OPERATORS ------------------------------------------------------------
00085 
00091     Model& operator= (const Model &right);
00092 
00093     // ACCESS ---------------------------------------------------------------
00094 
00099     const char* getId () const { return rnamlgetModelId ((const rnamlModel*) getCStructure ()); }
00100 
00105     void setId (const char *id) { rnamlsetModelId ((rnamlModel*) getCStructure (), id); }
00106 
00111     ModelInfo* getModelInfo () const;
00112 
00117     void setModelInfo (ModelInfo *modelInfo);
00118 
00123     std::vector< Base* >& getBases () { return bases; }
00124 
00129     void addBase (Base* base);
00130 
00135     StrAnnotation* getStrAnnotation () const;
00136 
00141     void setStrAnnotation (StrAnnotation *strAnnotation);
00142 
00147     SecondaryStructureDisplay* getSecondaryStructureDisplay () const;
00148 
00153     void setSecondaryStructureDisplay (SecondaryStructureDisplay *secondaryStructureDisplay);
00154 
00159     virtual void setCStructure (rnamlObject *obj);
00160 
00161     // METHODS --------------------------------------------------------------
00162 
00163     // I/O  -----------------------------------------------------------------
00164 
00165   };
00166 }
00167 
00168 #endif

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