00001 /* -*- Mode: C++ -*- 00002 * Model.h 00003 * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique 00004 * Université de Montréal. 00005 * Author : Patrick Charbonneau 00006 * Created On : Wed Sep 12 16:48:15 2003 00007 * $Revision: 1.11 $ 00008 * $Id: Model.h,v 1.11 2003/10/18 00:23:14 larosem Exp $ 00009 * 00010 * This file is part of xmlcpg. 00011 * 00012 * xmlcpg is free software; you can redistribute it and/or modify it under 00013 * the terms of the GNU Lesser General Public License as published by the Free 00014 * Software Foundation; either version 2 of the License, or (at your option) 00015 * any later version. 00016 * 00017 * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 * more details. 00021 * 00022 * You should have received a copy of the GNU Lesser General Public License 00023 * along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 */ 00026 00027 00028 #ifndef _rnaml_Model_h_ 00029 #define _rnaml_Model_h_ 00030 00031 #include <vector> 00032 00033 extern "C" { 00034 #include "model.h" 00035 #include "object.h" 00036 } 00037 00038 #include "Object.h" 00039 00040 00041 00042 namespace rnaml 00043 { 00044 class Base; 00045 class ModelInfo; 00046 class SecondaryStructureDisplay; 00047 class StrAnnotation; 00048 00049 00050 00051 class Model : public Object 00052 { 00056 std::vector< Base* > bases; 00057 00058 public: 00059 00060 // LIFECYCLE ------------------------------------------------------------ 00061 00065 Model () : Object ((rnamlObject*) rnamlnewModel ()) { } 00066 00071 Model (const Model &right); 00072 00077 Model* clone () const { return new Model (*this); } 00078 00082 virtual ~Model (); 00083 00084 // OPERATORS ------------------------------------------------------------ 00085 00091 Model& operator= (const Model &right); 00092 00093 // ACCESS --------------------------------------------------------------- 00094 00099 const char* getId () const { return rnamlgetModelId ((const rnamlModel*) getCStructure ()); } 00100 00105 void setId (const char *id) { rnamlsetModelId ((rnamlModel*) getCStructure (), id); } 00106 00111 ModelInfo* getModelInfo () const; 00112 00117 void setModelInfo (ModelInfo *modelInfo); 00118 00123 std::vector< Base* >& getBases () { return bases; } 00124 00129 void addBase (Base* base); 00130 00135 StrAnnotation* getStrAnnotation () const; 00136 00141 void setStrAnnotation (StrAnnotation *strAnnotation); 00142 00147 SecondaryStructureDisplay* getSecondaryStructureDisplay () const; 00148 00153 void setSecondaryStructureDisplay (SecondaryStructureDisplay *secondaryStructureDisplay); 00154 00159 virtual void setCStructure (rnamlObject *obj); 00160 00161 // METHODS -------------------------------------------------------------- 00162 00163 // I/O ----------------------------------------------------------------- 00164 00165 }; 00166 } 00167 00168 #endif