00001 /* -*- Mode: C++ -*- 00002 * BasePair.h 00003 * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique 00004 * Université de Montréal. 00005 * Author : Patrick Charbonneau 00006 * Created On : Wed Sep 12 16:48:15 2003 00007 * $Revision: 1.4 $ 00008 * $Id: BasePair.h,v 1.4 2003/10/18 00:20:46 larosem Exp $ 00009 * 00010 * This file is part of xmlcpg. 00011 * 00012 * xmlcpg is free software; you can redistribute it and/or modify it under 00013 * the terms of the GNU Lesser General Public License as published by the Free 00014 * Software Foundation; either version 2 of the License, or (at your option) 00015 * any later version. 00016 * 00017 * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 * more details. 00021 * 00022 * You should have received a copy of the GNU Lesser General Public License 00023 * along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 */ 00026 00027 00028 #ifndef _rnaml_BasePair_h_ 00029 #define _rnaml_BasePair_h_ 00030 00031 extern "C" { 00032 #include "basepair.h" 00033 #include "object.h" 00034 } 00035 00036 #include "Object.h" 00037 00038 00039 00040 namespace rnaml 00041 { 00042 class BaseId5p; 00043 class BaseId3p; 00044 00045 00046 00047 class BasePair : public Object 00048 { 00049 00050 public: 00051 00052 // LIFECYCLE ------------------------------------------------------------ 00053 00057 BasePair () : Object ((rnamlObject*) rnamlnewBasePair ()) { } 00058 00063 BasePair (const BasePair &right) : Object (right) { } 00064 00069 BasePair* clone () const { return new BasePair (*this); } 00070 00074 virtual ~BasePair () { } 00075 00076 // OPERATORS ------------------------------------------------------------ 00077 00083 BasePair& operator= (const BasePair &right); 00084 00085 // ACCESS --------------------------------------------------------------- 00086 00091 BaseId5p* getBaseId5p () const; 00092 00097 void setBaseId5p (BaseId5p *baseId5p); 00098 00103 BaseId3p* getBaseId3p () const; 00104 00109 void setBaseId3p (BaseId3p *baseId3p); 00110 00115 const char* getEdge5p () const { return rnamlgetBasePairEdge5p ((const rnamlBasePair*) getCStructure ()); } 00116 00121 void setEdge5p (const char *edge5p) { rnamlsetBasePairEdge5p ((rnamlBasePair*) getCStructure (), edge5p); } 00122 00127 const char* getEdge3p () const { return rnamlgetBasePairEdge3p ((const rnamlBasePair*) getCStructure ()); } 00128 00133 void setEdge3p (const char *edge3p) { rnamlsetBasePairEdge3p ((rnamlBasePair*) getCStructure (), edge3p); } 00134 00139 const char* getBondOrientation () const { return rnamlgetBasePairBondOrientation ((const rnamlBasePair*) getCStructure ()); } 00140 00145 void setBondOrientation (const char *bondOrientation) { rnamlsetBasePairBondOrientation ((rnamlBasePair*) getCStructure (), bondOrientation); } 00146 00151 const char* getStrandOrientation () const { return rnamlgetBasePairStrandOrientation ((const rnamlBasePair*) getCStructure ()); } 00152 00157 void setStrandOrientation (const char *strandOrientation) { rnamlsetBasePairStrandOrientation ((rnamlBasePair*) getCStructure (), strandOrientation); } 00158 00159 // METHODS -------------------------------------------------------------- 00160 00161 // I/O ----------------------------------------------------------------- 00162 00163 }; 00164 } 00165 00166 #endif