English
Français

Tools

Secondary Structure Rendering

Secondary structure in dot-bracket formatSupports dot-bracket Fasta format only. (cf. "Info>Data Specification" for mor details)

From a file:
or in plain text:

↑ Load an example

Parameters

Rendering type

Default
Reduced
Structure shape only
Detailled
Custom...
Resolution
Low (320x256)
Medium (640x512) (default)
High (800x640)
Higher (960x768)
Grayscale
Image Format
Portable Network Graphics (PNG) (default)
Graphics Interchange Format (GIF)
Joint Photographic Experts Group (JPG)
ZoomAccepts strictly positive floats usually between 0.2 and 5. (empy = automatic zoom)
OffsetOffset in pixels (signed integer). X= Y=
Bases display
None
Bases codes
Symbols
Bases colors
Black
By base
By hydrogen bond strength
By purines/pyrimidines type
Hydrogen bonds display
None
Dots
Dashes
Lines
Symbols
Hydrogen bonds colors
Black
Gray
Green
By hydrogen bond strength
Covalent links display
None
Dots
Dashes
Lines
Covalent links colors
Black
Gray
Stems or stem-loops display
None
Colored background
Coloration order This allows assigning a color to each stems or stem-loops. 110 colors are available (from 0 to 110, 0 meaning no color). For example, to color with color 5 only stem-loop 2 of a structure with 4 stems or stem-loops, just enter:
0,5,0,0

 

Write structure name