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Website operational, publication submitted

12/12/2007

The website (v2.0) is now officially operational and a paper about it has been submitted.

Valentin G.

Fixes

09/12/2007

Several spelling mistakes were corrected. The alignment algorithm does not return a score or a distance for structures which cannot be aligned. The menus were slightly modified.

Valentin G.

Translation update

29/09/2007

Site is now in version 2.0 beta. All pages should be translated by now unless we forgot something!

Valentin G.

Site 2.0 alpha

21/09/2007

The website is now running version 2.0 alpha. Only English documentation is missing.

Valentin G.

Week Update - version 1.999

10/09/2007

This update is about the alignment program and some user interface elements: sequences split and join costs can now be specified and results display includes similarity rates. From now, the site should be updated less often.

Valentin G.

Week Update - version 1.99

19/08/2007

This weeks also includes last week update (which wasn't done for vacation reason). Major new things are on structures and alignments rendering side and also on custom score scheme management.

Valentin G.

Week Update - version 1.98

05/08/2007

This week, several tools were updated and in particular secondary structure rendering tool.

Valentin G.

Week Update - version 1.97

29/07/2007

Several new tools are now available: similar structures search, stems/stem-loops search and distance matrix computation.

Valentin G.

Week Update - version 1.96

23/07/2007

Stems/stem-loops search is now available.

Valentin G.

Week Update - version 1.95

09/07/2007

Database issues have been fixed and all seem to be working again. The site has been updated at the same time: better computation tracking, better results display, search system is being improved. The structure rendering code is being rewritten and this function is not available for alignments.

Valentin G.

Week Update - version 1.85

17/06/2007

A small update this week (which hides however a lot of work): comparison results page now displays computation progression "in real time" (every 5 seconds) and also sorts structures. I also increased to 2000 the limit number of structure one can compare at once.

Valentin G.

Week Update

10/06/2007

Site is now running version 1.80! What's up? Several graphic improvements, improvements on structures comparison page (entries can be added dynamically) and support added for floating point scores.

Valentin G.

Version 1.75

02/06/2007

Update done.

Valentin G.

Site Important Update

02/06/2007

An important site update is going on and should be over soon. This update includes a lot of user interface improvements, some database modifications and a RSS feed was added to follow site develeoppment.

Valentin G.

Interface Update

20/05/2007

Interface update: RNA families can be selected for comparison; structure count limit for comparison increased; some minor graphic improvements.

Valentin G.

Update

21/02/2007

Small GUI update.

Valentin G.

Structures Rendering Issue

17/02/2007

Some configuration issue has been solved and structures rendering works again.

Valentin G.

DIRO Update

06/10/2006

After some configuration modifications on the servers of the DIRO, requiered updates for this site have been brought. Appologies for the late update.

Valentin G.

Structures Rendering

29/05/2006

Several UI improvments have been done: secondary structures can now be rendered, and RNA family or taxonomy can be browsed using tree-browsing.

Valentin G.

GUI update

22/05/2006

Some user interface improvment have been brought (structures selection from alphabetic browsing of RNA familly and species, colors by modules).

Valentin G.

News system

22/05/2006

New system added and users can now register to get soon informed about server updates.

Valentin G.

Comparison Tool and Update

15/05/2006

Improvments on database browsing tools and comparison tools now available.

Valentin G.

DB Update

04/05/2006

Some updates on the database...

Valentin G.

Official Server Setup

21/04/2006

Started to install the site on LBIT (DIRO) servers.

Valentin G.

RFam Import

06/03/2006

Importation of RFam database with success. You can now browse structures by ID. Some database access issue should be solved in the next days.

Valentin G.

Tools Update

10/08/2005

Modifications on tools page. Added rendering and convertion tools.

Valentin G.

Site Start

01/08/2005

Site startup.

Valentin G.