Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-<<<<<<<<<<<<<..<<<<<<..<<<....................................................................... ......................................................................>>>..>>>>>>..>>>>>>>>>>>>>-3' |
| RS004733 (Oryza sativa) | 5'-CUUGUGGGGAAUGUUGGCUGGCUCGAGGUAUCCACAU-CUUAAUUCCUCU----------------------------------------------- ---------------------------------CCGGCGAUCGAGCCGGCUCGGGCGUGU---GGAAGCGUCGGACCAGGCUUCAUUCCUCGCAAG-3' |
| RS004734 (Oryza sativa (japonica cultivar-group)) | 5'-GGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAU-AUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGG------------------------ -----------------------------GGAUAUGCAACAGGUGUGUGAC-AGGGGUAG---GUAGAUCUCGGAUCAGGCUUCAUUCCUCACACC-3' |
| RS004735 (Oryza sativa (japonica cultivar-group)) | 5'-GUUAAGGGGUUUGUUGUCUGGCUCGAGG-CAUCCGGG-ACUCCGGUUUCUCCUUU------------------------------------------ -----------------------------CCUACUGGAGGCGCCUAAUUUCCGGCGAGCU---CGGAGCCUCGGACCAGGCUUCAAUCCCUUUAAC-3' |
| RS004736 (Oryza sativa) | 5'-GUUAAGGGGAUUGUUGUCUGGUUCAAGGUCUCCACAU-UGUGCAAAAU------------------------------------------------- ---------------------------------GUUCAUUCAUGGAGGCACAGGAUGCUU---GGUGAUCUCGGACCAGGCUUCAAUCCCUUUAAC-3' |
| RS004737 (Oryza sativa) | 5'-UCUGAGUGGAAUGUUGUCUGGUUCAAGGUCUCAUGCA-CCUUGCGGUUUUGAGGA------------------------------------------ -----------------------------UGAUUUGUGCAAGGUUUUUCAUUCCUCUCAUCCGUGGGAUCUCGGACCAGGCUUCAUUCCCCUCAGA-3' |
| RS004738 (Oryza sativa (japonica cultivar-group)) | 5'-GUUGAGAGGAAUGUCGUCUGGCCUGAG---------------------------------------------------------------------- ---------------------------------AUCGUACCACAGUGGUGGGUACACGUG---GACGGUCUCGGACCAGGCUUCAUUCCCCUCAAC-3' |
| RS004739 (Oryza sativa) | 5'-GGUGUCUGGAAUGGAGGCUGAUCCAAGAUCAUUGCUU-GGUGCAAAAUACUAGGGCAUUGUUGUAAGUGCCA------------------------- -----------------------------UUAGUUCUUUUUUGUUUCCGAGUUUGUUAUC---GAGGAUCUCGGACCAGGCUUCAUUCCUCACACC-3' |
| RS004740 (Oryza sativa) | 5'-UUUGAGGGGAAUGUUGUCUGGCUCGGGGCUACUUUUA-AUUUCUCUCUCUUUUGAUAUCUUCUUUUCUCGAUCUCCUAGCUUGAUCUUUUGAUCUCU CAAAUCGAUCUUAAGAAAA----------AGAUCAGUCAAAGAGAUGAGAGUAGAUGUCU---GUAGAUCUCGGACCAGGCUUCAUUCCCCCCAAA-3' |
| RS004741 (Oryza sativa) | 5'-GUUAAGGGGUUUGUUGUCUGGUUCAAGGCCUCCUGCU-GUCCUACAUCACAUUUUUUUUUCUUUGUUCUGAAUUUCUGA------------------ -----------------------------UGGAUGUGUGUGUGCAUGAUGCAUGGCUGGU---GGUGACCUCGGACCAGGCUUCAUUCCCUUUAAC-3' |
| RS004742 (Zea mays) | 5'-GUUGAGGGGAAUGUCGUCUGGCGCGAGACCGUA---------------------------------------------------------------- ---------------------------------CCAGACGACGUGCUCUCUCGGUCGUCG---GACGGUCUCGGACCAGGCUUCAUUCCCCCCAAC-3' |
| RS004743 (Zea mays) | 5'-GUUGAGGGGAAUGUCGUCUGGCGCGAGA--------------------------------------------------------------------- ---------------------------------CCGUACCGGACGACGUGCUCUCGGUUG---GACGGUCUCGGACCAGGCUUCAUUCCUCCCAAC-3' |
| RS004744 (Zea mays) | 5'---UGAGUGGAAUGUUGUCUGGUUCAAGGUCUUGCUUUCCGAUUUGAGAAUGAUCCAUGCUUGC---------------------------------- -----------------------------AUGUGUAGGUUUUUUUGUUCCUCAGAUCUAC---AAGAUC-UCGGACCAGGCUUCAUUCCCCUCAGG-3' |
| RS004745 (Nicotiana sylvestris (wood tobacco)) | 5'---UGAGGGGAAUGUUGUCUGGCUCGAGGUCACCAACU-AGAUCCAUAAACUCCAUAUUAUGCUUUUUUGAAUAUAAAGAUUAGUUUUUCUUUUCUUU UCACUAGGAAAAUUUAAAGAUUAGUUGAUUAUAUUAAAAAGGGUUUAUGGAUCAUGAGUU---AGUGUUGUCGGACCAGGCUUCAUUCCCCCCAAU-3' |
| RS004746 (Medicago truncatula (barrel medic)) | 5'-GUUCAGGGGAAUGGUGUCUGAUUCGAGACCAU----------------------------------------------------------------- ---------------------------------UCGUCACAAGUAAACAGUAGCCUUGAG---AAUGAUCUCGGACCAGGCUUCAUUCCCCCUAGC-3' |
| RS004747 (Medicago truncatula (barrel medic)) | 5'-UUUGAGGGGAAUGUUGUCUGGCUCGAGGACGCUUUCU-UCUCGAUCUAAUGC--------------------------------------------- -------------------------------------AAAUUUGUGGUCAUGGAUUGUAA---AGUAUUCUCGGACCAGGCUUCAUUCCCCCCAAU-3' |
| RS004748 (Medicago truncatula (barrel medic)) | 5'-UUUGAGGGGAAUGUUGGCUGGCUCGAGGCUUUUCAGU-UUCACAAAGGAAGU--------------------------------------------- --------------------------------------UCAGUCUUAAUUGUAUGAACUA---UAAGGCUUCGGACCAGGCUUCAUUCCCCUCAAA-3' |
| RS004749 (Medicago truncatula (barrel medic)) | 5'-GUUGAGAGGAACGUUGUCUGGCUCGAGGUGAUGGAGA-UGGAAGA---------------------------------------------------- ---------------------------------GUACUCUCUACUCACUCAUCACUAACU---UUCAAUCUCGGACCAGGCUUCAUUCCCCCCAGC-3' |
| RS004750 (Medicago truncatula (barrel medic)) | 5'-GUUGAGGGGAAUGUUGCCUGGCUCAAGGCUUUUCAUA-GUUU------------------------------------------------------- -------------------------------------------GAUCUAUCUACUAUGAU---UAAGGCUUCGGGCCAGGCUUCAUCCCCCUCAAA-3' |
| RS004751 (Medicago truncatula (barrel medic)) | 5'-GCUGAGAGGAACGCAGUCUGGCUCGAGGAAUGCUCAG-AUCUGUUU--------------------------------------------------- ---------------------------------UGAUCUGAUCGAUAUGUUCAUAUCUAA---UUAAUUCUCGGACCAGGCUUCAUUCCUCCCAUC-3' |
| RS004752 (Medicago truncatula (barrel medic)) | 5'-GGUGUUUGGAAUGAGGUUUGUUCCAAGAUCAUCACAC-AUCAUGUUUCUUCUUCCCUUUCAAUAAUUCUUGAUUAAUUUAUGUUCAUACAUCUAUAU AUAUAUCUAUAUAUAUUAUCA--------AGUCAUUACAUGCAUGGGAUGAGAUAUUGAG---AGUGAUCUCGGACCAGGCUUCAUUCCUCACACC-3' |
| RS004753 (Medicago truncatula (barrel medic)) | 5'-GUUGAUGGGAAUGUUGUUUGGCUCGAGGUAAUAACUA-ACUCAAUUUCUUUGUCUUUGAAAGCUUUUCUUUGUUUCACUCUUUUUGAUUCUUAGAAA GUUGAAACU--------------------AAGUGAGCUUUAAAGGUUUGAUUUUGAUGUGU--GAUUAUCUCGGACCAGGCUUCAUUCCUACCAAC-3' |
| RS004754 (Arabidopsis thaliana (thale cress)) | 5'-GUUGUGGGGAAUGUUGUUUGGAUCGAGGAUAUCAUAA-ACGCAUACACAUGUUUAUAUGUUAUGAUGCAUUAUAUGACUGAUG-------------- -----------------------------UAAUGUACAUAUAUAUACAUACAUGCCACAU---GGUAUCGUCGGACCAGGCUUCAUCCCCCUCAAC-3' |
| RS004755 (Arabidopsis thaliana (thale cress)) | 5'-UUUGAGGGGACUGUUGUCUGGCUCGAGGACUCUUAUU-CUAAUACAAUCUCAUUUGAAU-------------------------------------- -----------------------------ACAUUCAGAUCUGAUGAUUGAUUAGGGUUUU---AGUGUCGUCGGACCAGGCUUCAUUCCCCCCAAU-3' |
| RS004756 (Arabidopsis thaliana (thale cress)) | 5'-UUUGAGGGGACUGUUGUCUGGCUCGAGGACUCUGGCU-CGCUCUAUUCAUGUUGGAUCUCUUUCGAUCUAACAAUCGAAUUGA-------------- -----------------------------ACCUUCAGAUUUCAGAUUUGAUUAGGGUUUU---AGCGUCUUCGGACCAGGCUUCAUUCCCCCCAAU-3' |
| RS004757 (Arabidopsis thaliana (thale cress)) | 5'-GUUCAGGUGAAUGAUGCCUGGCUCGAGACCAUUCAAU-CUCA------------------------------------------------------- ---------------------------------UGAUCUCAUGAUUAUAACGAUGAUGAU---GAUGAUGUCGGACCAGGCUUCAUUCCCCUCAAC-3' |
| RS004758 (Arabidopsis thaliana (thale cress)) | 5'-GUUGAGAGGAUUGUUGUCUGGCUCGAGGUCAUGAAGA-AGAGAAUCACUCGAAUU------------------------------------------ -----------------------------AAUUUGGAAGAACAAAUUAAGAAAACCCUAG---AUGAUUCUCGGACCAGGCUUCAUUCCCCCUAAC-3' |
| RS004759 (Arabidopsis thaliana (thale cress)) | 5'-GUUGAGGGGAAUGUUGUCUGGAUCGAGGAUAUUAUAG-AUAUAUACAUGUGU--------------------------------------------- ---------------------------------AUGUUAAUGAUUCAAGUGAUCAUAGAG---AGUAUCCUCGGACCAGGCUUCAUCCCCCCCAAC-3' |
| RS004760 (Arabidopsis thaliana (thale cress)) | 5'-UUUGAGGGGAAUGUUGUCUGGCACGAGGCCCUUAACUUAGAUCUAUAUUUGAUUAUAUAUAUAUGUCUCUUCUUUAUUCAU---------------- -----------------------------UAGUCUAUACAUGAAUGAUCAUUUUACGGUU---AAUGACGUCGGACCAGGCUUCAUUCCCCUCAAU-3' |
| RS004761 (Arabidopsis thaliana (thale cress)) | 5'-GUUGAGAGGAAUAUUGUCUGGCUCGAGGUCAUGAAGA-AGAUCGGUAGAUUG--------------------------------------------- ---------------------------------AUUCAUUUUAAAGAGUGAAAUCCCUAA---AUGAUUCUCGGACCAGGCUUCAUUCCCCCCAAC-3' |
| RS004762 (Arabidopsis thaliana (thale cress)) | 5'-GUUUAGAGGAAUGUUGUUUGGCUCGAGGUCAUGGAGA-GUA-------------------------------------------------------- ---------------------------------AUUCGUUAACCCAACUCAAAACUCUAA---AUGAUUCUCGGACCAGGCUUCAUUCCCCUCAAC-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

RSS Feed