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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-<<<<<<<<<<<<<..<<<<<<..<<<.......................................................................

......................................................................>>>..>>>>>>..>>>>>>>>>>>>>-3'

 
RS004733 (Oryza sativa)

5'-CUUGUGGGGAAUGUUGGCUGGCUCGAGGUAUCCACAU-CUUAAUUCCUCU-----------------------------------------------

---------------------------------CCGGCGAUCGAGCCGGCUCGGGCGUGU---GGAAGCGUCGGACCAGGCUUCAUUCCUCGCAAG-3'

RS004734 (Oryza sativa (japonica cultivar-group))

5'-GGUGUUUGGAAUGCAGUUUGAUCCAAGAUCUGCCUAU-AUAUAUGGUGUGUAUAUCAUAUCUUGUGAUAUGGG------------------------

-----------------------------GGAUAUGCAACAGGUGUGUGAC-AGGGGUAG---GUAGAUCUCGGAUCAGGCUUCAUUCCUCACACC-3'

RS004735 (Oryza sativa (japonica cultivar-group))

5'-GUUAAGGGGUUUGUUGUCUGGCUCGAGG-CAUCCGGG-ACUCCGGUUUCUCCUUU------------------------------------------

-----------------------------CCUACUGGAGGCGCCUAAUUUCCGGCGAGCU---CGGAGCCUCGGACCAGGCUUCAAUCCCUUUAAC-3'

RS004736 (Oryza sativa)

5'-GUUAAGGGGAUUGUUGUCUGGUUCAAGGUCUCCACAU-UGUGCAAAAU-------------------------------------------------

---------------------------------GUUCAUUCAUGGAGGCACAGGAUGCUU---GGUGAUCUCGGACCAGGCUUCAAUCCCUUUAAC-3'

RS004737 (Oryza sativa)

5'-UCUGAGUGGAAUGUUGUCUGGUUCAAGGUCUCAUGCA-CCUUGCGGUUUUGAGGA------------------------------------------

-----------------------------UGAUUUGUGCAAGGUUUUUCAUUCCUCUCAUCCGUGGGAUCUCGGACCAGGCUUCAUUCCCCUCAGA-3'

RS004738 (Oryza sativa (japonica cultivar-group))

5'-GUUGAGAGGAAUGUCGUCUGGCCUGAG----------------------------------------------------------------------

---------------------------------AUCGUACCACAGUGGUGGGUACACGUG---GACGGUCUCGGACCAGGCUUCAUUCCCCUCAAC-3'

RS004739 (Oryza sativa)

5'-GGUGUCUGGAAUGGAGGCUGAUCCAAGAUCAUUGCUU-GGUGCAAAAUACUAGGGCAUUGUUGUAAGUGCCA-------------------------

-----------------------------UUAGUUCUUUUUUGUUUCCGAGUUUGUUAUC---GAGGAUCUCGGACCAGGCUUCAUUCCUCACACC-3'

RS004740 (Oryza sativa)

5'-UUUGAGGGGAAUGUUGUCUGGCUCGGGGCUACUUUUA-AUUUCUCUCUCUUUUGAUAUCUUCUUUUCUCGAUCUCCUAGCUUGAUCUUUUGAUCUCU

CAAAUCGAUCUUAAGAAAA----------AGAUCAGUCAAAGAGAUGAGAGUAGAUGUCU---GUAGAUCUCGGACCAGGCUUCAUUCCCCCCAAA-3'

RS004741 (Oryza sativa)

5'-GUUAAGGGGUUUGUUGUCUGGUUCAAGGCCUCCUGCU-GUCCUACAUCACAUUUUUUUUUCUUUGUUCUGAAUUUCUGA------------------

-----------------------------UGGAUGUGUGUGUGCAUGAUGCAUGGCUGGU---GGUGACCUCGGACCAGGCUUCAUUCCCUUUAAC-3'

RS004742 (Zea mays)

5'-GUUGAGGGGAAUGUCGUCUGGCGCGAGACCGUA----------------------------------------------------------------

---------------------------------CCAGACGACGUGCUCUCUCGGUCGUCG---GACGGUCUCGGACCAGGCUUCAUUCCCCCCAAC-3'

RS004743 (Zea mays)

5'-GUUGAGGGGAAUGUCGUCUGGCGCGAGA---------------------------------------------------------------------

---------------------------------CCGUACCGGACGACGUGCUCUCGGUUG---GACGGUCUCGGACCAGGCUUCAUUCCUCCCAAC-3'

RS004744 (Zea mays)

5'---UGAGUGGAAUGUUGUCUGGUUCAAGGUCUUGCUUUCCGAUUUGAGAAUGAUCCAUGCUUGC----------------------------------

-----------------------------AUGUGUAGGUUUUUUUGUUCCUCAGAUCUAC---AAGAUC-UCGGACCAGGCUUCAUUCCCCUCAGG-3'

RS004745 (Nicotiana sylvestris (wood tobacco))

5'---UGAGGGGAAUGUUGUCUGGCUCGAGGUCACCAACU-AGAUCCAUAAACUCCAUAUUAUGCUUUUUUGAAUAUAAAGAUUAGUUUUUCUUUUCUUU

UCACUAGGAAAAUUUAAAGAUUAGUUGAUUAUAUUAAAAAGGGUUUAUGGAUCAUGAGUU---AGUGUUGUCGGACCAGGCUUCAUUCCCCCCAAU-3'

RS004746 (Medicago truncatula (barrel medic))

5'-GUUCAGGGGAAUGGUGUCUGAUUCGAGACCAU-----------------------------------------------------------------

---------------------------------UCGUCACAAGUAAACAGUAGCCUUGAG---AAUGAUCUCGGACCAGGCUUCAUUCCCCCUAGC-3'

RS004747 (Medicago truncatula (barrel medic))

5'-UUUGAGGGGAAUGUUGUCUGGCUCGAGGACGCUUUCU-UCUCGAUCUAAUGC---------------------------------------------

-------------------------------------AAAUUUGUGGUCAUGGAUUGUAA---AGUAUUCUCGGACCAGGCUUCAUUCCCCCCAAU-3'

RS004748 (Medicago truncatula (barrel medic))

5'-UUUGAGGGGAAUGUUGGCUGGCUCGAGGCUUUUCAGU-UUCACAAAGGAAGU---------------------------------------------

--------------------------------------UCAGUCUUAAUUGUAUGAACUA---UAAGGCUUCGGACCAGGCUUCAUUCCCCUCAAA-3'

RS004749 (Medicago truncatula (barrel medic))

5'-GUUGAGAGGAACGUUGUCUGGCUCGAGGUGAUGGAGA-UGGAAGA----------------------------------------------------

---------------------------------GUACUCUCUACUCACUCAUCACUAACU---UUCAAUCUCGGACCAGGCUUCAUUCCCCCCAGC-3'

RS004750 (Medicago truncatula (barrel medic))

5'-GUUGAGGGGAAUGUUGCCUGGCUCAAGGCUUUUCAUA-GUUU-------------------------------------------------------

-------------------------------------------GAUCUAUCUACUAUGAU---UAAGGCUUCGGGCCAGGCUUCAUCCCCCUCAAA-3'

RS004751 (Medicago truncatula (barrel medic))

5'-GCUGAGAGGAACGCAGUCUGGCUCGAGGAAUGCUCAG-AUCUGUUU---------------------------------------------------

---------------------------------UGAUCUGAUCGAUAUGUUCAUAUCUAA---UUAAUUCUCGGACCAGGCUUCAUUCCUCCCAUC-3'

RS004752 (Medicago truncatula (barrel medic))

5'-GGUGUUUGGAAUGAGGUUUGUUCCAAGAUCAUCACAC-AUCAUGUUUCUUCUUCCCUUUCAAUAAUUCUUGAUUAAUUUAUGUUCAUACAUCUAUAU

AUAUAUCUAUAUAUAUUAUCA--------AGUCAUUACAUGCAUGGGAUGAGAUAUUGAG---AGUGAUCUCGGACCAGGCUUCAUUCCUCACACC-3'

RS004753 (Medicago truncatula (barrel medic))

5'-GUUGAUGGGAAUGUUGUUUGGCUCGAGGUAAUAACUA-ACUCAAUUUCUUUGUCUUUGAAAGCUUUUCUUUGUUUCACUCUUUUUGAUUCUUAGAAA

GUUGAAACU--------------------AAGUGAGCUUUAAAGGUUUGAUUUUGAUGUGU--GAUUAUCUCGGACCAGGCUUCAUUCCUACCAAC-3'

RS004754 (Arabidopsis thaliana (thale cress))

5'-GUUGUGGGGAAUGUUGUUUGGAUCGAGGAUAUCAUAA-ACGCAUACACAUGUUUAUAUGUUAUGAUGCAUUAUAUGACUGAUG--------------

-----------------------------UAAUGUACAUAUAUAUACAUACAUGCCACAU---GGUAUCGUCGGACCAGGCUUCAUCCCCCUCAAC-3'

RS004755 (Arabidopsis thaliana (thale cress))

5'-UUUGAGGGGACUGUUGUCUGGCUCGAGGACUCUUAUU-CUAAUACAAUCUCAUUUGAAU--------------------------------------

-----------------------------ACAUUCAGAUCUGAUGAUUGAUUAGGGUUUU---AGUGUCGUCGGACCAGGCUUCAUUCCCCCCAAU-3'

RS004756 (Arabidopsis thaliana (thale cress))

5'-UUUGAGGGGACUGUUGUCUGGCUCGAGGACUCUGGCU-CGCUCUAUUCAUGUUGGAUCUCUUUCGAUCUAACAAUCGAAUUGA--------------

-----------------------------ACCUUCAGAUUUCAGAUUUGAUUAGGGUUUU---AGCGUCUUCGGACCAGGCUUCAUUCCCCCCAAU-3'

RS004757 (Arabidopsis thaliana (thale cress))

5'-GUUCAGGUGAAUGAUGCCUGGCUCGAGACCAUUCAAU-CUCA-------------------------------------------------------

---------------------------------UGAUCUCAUGAUUAUAACGAUGAUGAU---GAUGAUGUCGGACCAGGCUUCAUUCCCCUCAAC-3'

RS004758 (Arabidopsis thaliana (thale cress))

5'-GUUGAGAGGAUUGUUGUCUGGCUCGAGGUCAUGAAGA-AGAGAAUCACUCGAAUU------------------------------------------

-----------------------------AAUUUGGAAGAACAAAUUAAGAAAACCCUAG---AUGAUUCUCGGACCAGGCUUCAUUCCCCCUAAC-3'

RS004759 (Arabidopsis thaliana (thale cress))

5'-GUUGAGGGGAAUGUUGUCUGGAUCGAGGAUAUUAUAG-AUAUAUACAUGUGU---------------------------------------------

---------------------------------AUGUUAAUGAUUCAAGUGAUCAUAGAG---AGUAUCCUCGGACCAGGCUUCAUCCCCCCCAAC-3'

RS004760 (Arabidopsis thaliana (thale cress))

5'-UUUGAGGGGAAUGUUGUCUGGCACGAGGCCCUUAACUUAGAUCUAUAUUUGAUUAUAUAUAUAUGUCUCUUCUUUAUUCAU----------------

-----------------------------UAGUCUAUACAUGAAUGAUCAUUUUACGGUU---AAUGACGUCGGACCAGGCUUCAUUCCCCUCAAU-3'

RS004761 (Arabidopsis thaliana (thale cress))

5'-GUUGAGAGGAAUAUUGUCUGGCUCGAGGUCAUGAAGA-AGAUCGGUAGAUUG---------------------------------------------

---------------------------------AUUCAUUUUAAAGAGUGAAAUCCCUAA---AUGAUUCUCGGACCAGGCUUCAUUCCCCCCAAC-3'

RS004762 (Arabidopsis thaliana (thale cress))

5'-GUUUAGAGGAAUGUUGUUUGGCUCGAGGUCAUGGAGA-GUA--------------------------------------------------------

---------------------------------AUUCGUUAACCCAACUCAAAACUCUAA---AUGAUUCUCGGACCAGGCUUCAUUCCCCUCAAC-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.