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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-.<<<<<.....<<<<..<<<<.......<<<<..................................................<<<............

...............>>>>>>>...>>>>>>>>.....>>>>>-3'

 
RS001931 (Rana catesbeiana (bullfrog))

5'-GGUCAGCAACAGCUC-AGCGGUUACUUCUCGA-----CACGGAAUUGUAAUUCUG------------------------AAAACCUUUC--------

-------------GGGGUUCGAAACCCGCGGGCGCCACCUGAC-3'

RS001932 (Mus musculus (house mouse))

5'-GGCCAGCUUUAGCUC-AGCGGUUAC--UUCGACAGUGGUUCAGUUCAU-UACCAGCUAUUCGUAGCAGGUUCGAACAACACAACCAACCACUUACCU

AACCCGUGAGUGUUUGGUUCGAGACCCGCGGGCGCUCCCUGGC-3'

RS001933 (Mus musculus (house mouse))

5'-GGCCAGCUUUAGCUG-AGCGGUUAC--UUUGACAGUGUUUCAGUUCAU-UACCAGCUAUUCGUAGCAGGUUCAAAUAACACAACCAACCACUUGCCU

AACCCAUGAGUGUUUGGUUCGAGACCGGCGGGCGCUCCCUGGC-3'

RS001934 (Rattus norvegicus (Norway rat))

5'-GGCCAGCUUUAGCUC-AGCGGUUAC--UUCGACGUGCUCCAGUUUGAGCAGGCUAUGUAACGUGGUCGGUUCGAGCAACACAACCAGCCGCUUGCCU

AUCUGGUGAGUGGUUGGUUCGAGACCCGCGGGCGCUCUCUGGC-3'

RS001935 (Homo sapiens (human))

5'-GGCUGGCUUUAGCUC-AGCGGUUAC--UUCGACAAUGCUUUCCAUGGUUAGGAAA------------------------CCAACCUCUC--------

----------UGGGUGGUUUGAGACCCGUGGGCCCUCUCCAGU-3'

RS001936 (Homo sapiens (human))

5'-GGYCAGCUUYAGCUC-AGCGGUUAC--UUCGACAGUUCUUUAAUUG---AAACAA------------------------GCAACCUGUC--------

----------UGGGUGGUUCGARACCCGCGGCCGCUMYCUGGC-3'

RS001937 (Homo sapiens (human))

5'-GGCUGGCUUUAGCUC-AGCGGUUAC--UUCGCGUGU-------------CAUCAA------------------------ACCACCUCUC--------

----------UGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGC-3'

RS001938 (Homo sapiens (human))

5'-GGUCGGAGUUAGCUCAAGCGGUUAC--CUCCUCAUGCC-----------GGACUU------------------------UCUAUCUGUCCAUCUCUG

U---------GCUGGGGUUCGAGACCCGCGGGUGCUUACUGAC-3'

RS001939 (Homo sapiens (human))

5'-GGYCAGCWWYAGCUC-AGCGGUUAC--UUCGAGUAC-------------AUUGUA------------------------ACCACCUCUC--------

----------UGGGUGGUUCGARACCCGCGGSCGCYMYCUGRC-3'

RS001940 (Homo sapiens (human))

5'-GGCUGGCUUUAGCUC-AGCGGUUAC--UUCGAGUAC-------------AUUGUA------------------------ACCACCUCUC--------

----------UGGGUGGUUCGAGACCCGCGGGUGCUUUCCAGC-3'

RS001941 (Homo sapiens (human))

5'-GGCUGGCUUUAGCUC-AGCGGUUAC--UUCGACAGUUCUUUAAUUG---AAACAA------------------------GCAACCUGUC--------

----------UGGGUUGUUCGAGACCCGCGGGCGCUCUCCAGU-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.