Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-.....<<<<<<<<<..<<<<<<........................................................................... ..........................................................................>>>>.>>.....<<<<<<........ .............................................................................>>>>>>....>>>>........< <<<...<<<<<...................................>>>>>...>>>>.......>>>>>............-3' |
| RS003621 (Thermoplasma acidophilum) | 5'-CUGGUGUGGUGGGGGAGCUCCAUA------------------------------------------------------------------------- --------------------------------------------------------------------------AGGG-GCUGAGAGGAUCCGG------ ---------------------------------------------------------------------------AUGGAUC-GA-UCCCUGGA----AC CUGA-UCCGGGUAAU-------------------------------ACCGGCG-GAGG--GA--AAUUAUGGAAAAAAAUAG-3' |
| RS003622 (Thermoplasma acidophilum) | 5'-AACUAGGCGAGGGGGAGCUCCAUA------------------------------------------------------------------------- -------------------------------------------------------------------------AGGGG-GCUGAGAGGAUCCGG------ ---------------------------------------------------------------------------AUGGAUCGA---CCCCUGGA---AC CUGA-UCCGGGUAAU-------------------------------ACCGGCG-GAGG--GA--AUCGUAUGAUGAAUGAGA-3' |
| RS003623 (Corynebacterium diphtheriae) | 5'-AGUGUCCCCCGCGGGCGCCCGAGC------------------------------------------------------------------------- --------------------------------------------------------------------------ACGG-GCUGAGAUUGCGCUGAUGCU- -----------------------------------------------------------------------------GUGCAAGCA-CCGUUUGA---AC CUG--UCUGGUUAAC-------------------------------ACCAGCG-AAGG--AA--GAGAGGAGCGCGAGCCUA-3' |
| RS003624 (Corynebacterium diphtheriae) | 5'-ACGAGAUGCCCGG-GUGCCAUGUGCUUGCUGU----------------------------------------------------------------- -------------------------------------------------------------------------ACGUG-GCUGAGACGGCUGU------- ----------------------------------------------------------------------------UUGGCCGAA---CCGUAGA---AC CUGA-UCUGGGUAAU-------------------------------ACCAGCGAUAGG--AA---GACUUCAUACUGUGACU-3' |
| RS003625 (Corynebacterium glutamicum ATCC 13032) | 5'-AUACUAGGCACGGGGUGCCAACCGGAUGGAAAAAUUC------------------------------------------------------------ -------------------------------------------------------------------------CGGAG-GCUGAGAAA------------ ----------------------------------------------------------------------------------ACA--CCCGUUGA---AC CUGC-UCUAGCUCGU-------------------------------ACUAGCG-AAGG--GA---UGGCCUUAACGUGGCUA-3' |
| RS003626 (Corynebacterium diphtheriae) | 5'-UUUAUAAAUCACGGGUGCUGGACGGCAUACGUUUGCC------------------------------------------------------------ -------------------------------------------------------------------------ACAAA-GCUGAGACAGGGCGAGAAGAC GUGCAC----------------------------------------------------------------------GUCCCUGAA--CCGUUGA----AC CUGA-UCCGGGUAAU-------------------------------ACCGGCGAUAGG--AA---GAAUAAUGAACCGAUCG-3' |
| RS003627 (Corynebacterium callunae) | 5'-GGCAGUCCCCACGGGCGCCCGAGC------------------------------------------------------------------------- --------------------------------------------------------------------------ACGG-GCUGAGAUCGCGCUGAUUSU- ----------------------------------------------------------------------------GCGCGAGCA--CCGUUUGA---AC CUG--UCCGGUUAGC-------------------------------ACCGGCG-AAGG--AA--GAGAGGAAUGGUGCAAUG-3' |
| RS003628 (Mycobacterium leprae) | 5'-ACUUCAGUACACGGGAGUCCCCAGGCAGUCCGAAUCU------------------------------------------------------------ -------------------------------------------------------------------------GCGGG-GCUGAGAGUGGGCACAGCCAG AGUGACUGAAC----------------------------------------------------------------CUACCCUUA---CCCUCCCAC--AC CUGA-UCCGGGUCAU-------------------------------GCCGGCG-AAGG--GA--GGUUCAAGAUGCCGUCAG-3' |
| RS003629 (Mycobacterium leprae) | 5'-AAAAAACCACGCGGGAGCACACACCA----------------------------------------------------------------------- -------------------------------------------------------------------------AGUGC-GCUGAGAGGACGGAUCGG--- ---------------------------------------------------------------------------GGCCGUC-GA--CCGUAUGA---AC CUGA--CCGGGUAAU-------------------------------GCCGGCG-UAGG--GA--GAUGAAUAAUGACUGAAA-3' |
| RS003630 (Mycobacterium avium subsp. paratuberculosis K-10) | 5'-UCCAUCAGACGCGGGAGCGCACGCCA----------------------------------------------------------------------- -------------------------------------------------------------------------AGUGU-GCUGAGAGGACGGCUCGG--- ---------------------------------------------------------------------------GGCCGUC-GA--CCGUACGA---AC CUGA--CCGGGUAAU-------------------------------GCCGGCG-UAGG--GA---GAUGAAAAAUGACCGCA-3' |
| RS003631 (Mycobacterium avium subsp. paratuberculosis K-10) | 5'-CGUUUUAGACACGGGAGUCCCGGGAC----------------------------------------------------------------------- -------------------------------------------------------------------------CGGGG-UCUGAGAGUGGGCGCGC---- ---------------------------------------------------------------------------CCGCCCUUA---CCGUCAC----AC CUGA-UCCGGAUCAU-------------------------------GCCGGCG-AAGG--GA---GGCCGCGAAUGCCCUCG-3' |
| RS003632 (Mycobacterium tuberculosis H37Rv) | 5'-CCCUGUAGACACGGGAGUCCCGGGAG----------------------------------------------------------------------- -------------------------------------------------------------------------CGGGG-UCUGAGAGUGGGCGCGC---- ---------------------------------------------------------------------------CUGCCCUUA---CCGUCAC----AC CUGA-UCCGGAUCAU-------------------------------GCCGGCG-AAGG--GA--GGUCAAGGAUGGCGUCCG-3' |
| RS003633 (Mycobacterium tuberculosis H37Rv) | 5'-GGGUACCCACGCGGGAGCGCACGCCG----------------------------------------------------------------------- -------------------------------------------------------------------------AGUGC-GCUGAGAGGACGGCUCGG--- ---------------------------------------------------------------------------GGCCGUC-GA--CCGUACGA---AC CUGA--CCGGGUAAU-------------------------------GCCGGCG-UAGG--GA---GUUGCAAAUGACCAUCA-3' |
| RS003634 (Mycobacterium tuberculosis) | 5'-GGGUACCCACGCGGGAGCGCAACGCCG---------------------------------------------------------------------- -------------------------------------------------------------------------AGUGC-GCUGAGAGGACGGCUCGG--- ---------------------------------------------------------------------------GGCCGUC-GA--CCGUACGA---AC CUGA--CCGGGUAAU-------------------------------GCCGGCG-UAGG--GA---GUUGCAAAUGACCAUCA-3' |
| RS003635 (Streptomyces coelicolor) | 5'-CUUUGUACACGCGGGAGCUCGGAGC------------------------------------------------------------------------ -------------------------------------------------------------------------ACCGG-GCUGAGAGGGCGCUGACCUCC GUCCCAGCGAUGUUUCACGGGAAACGUCACCGAAGUCGAGUGACGUAUCCCACGAAGCGUCGACGGACGGAAGCCGCUGCGUCGA--CCGCCGA----AC CUGUUACCGGGUAAU-------------------------------GCCGGCG-UAGG--GA---GUAGGUCUCAUGACCAU-3' |
| RS003636 (Streptomyces coelicolor) | 5'-AUAUUCCGACAGGGGAGCGCCA--------------------------------------------------------------------------- --------------------------------------------------------------------------CAGC-GCUGAGAGUGCGGCACC---- ---------------------------------------------------------------------------GGCCGCA-GA--CCCUCCGA---AC CUGG-CCCAGGUCAU-------------------------------UCUGG-G-UAGG--GA--GAUCGGUCACCACUCGAG-3' |
| RS003637 (Streptomyces coelicolor) | 5'-CAAGGCACUCGCGGGAGCCCGGACGC----------------------------------------------------------------------- -------------------------------------------------------------------------ACCGG-GCUGAGAGGGAGGCUGGC--- ----------------------------------------------------------------------------GGCCUCCGA--CCGUACGA---AC CUGA-UCCGGGUCAU-------------------------------GCCGGCG-AAGG--GA---GGGGCUGGACGCCCAUG-3' |
| RS003638 (Bacteroides thetaiotaomicron VPI-5482) | 5'-UUCACUAAGUAGGGGUGCCUUAACAU----------------------------------------------------------------------- -------------------------------------------------------------------------GACGG-GCUGAGAAC------------ ----------------------------------------------------------------------------------AUA--CCCAUAGA---AU CUGA-ACCGGGUAAU-------------------------------GCCGGCG-UAGA--GA---ACUAAUUAAUAAGCAAG-3' |
| RS003639 (Bacteroides thetaiotaomicron VPI-5482) | 5'-GUAAAGACAAAGGGGUGCCCCCAAA------------------------------------------------------------------------ -------------------------------------------------------------------------GAGGG-GCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CCCUAGGA---AC CUGA-GGCAGUUAGC-------------------------------ACUGACG-UAGG--GA---UUGUGUUUCUUUCUUAU-3' |
| RS003640 (Bacteroides thetaiotaomicron VPI-5482) | 5'-UUCACGCAAUAGGGGUGCCCUAACAU----------------------------------------------------------------------- -------------------------------------------------------------------------GACAG-GCUGAGAAC------------ ----------------------------------------------------------------------------------AUA--CCCAUAGA---AU CUGA-UCCGGGUAAU-------------------------------GCCGGCG-UAGA--GA---ACGAAUAAAUAAGCAAA-3' |
| RS003641 (Porphyromonas gingivalis W83) | 5'-AAUUGGGAGAAGGGGUGCUUCCUGUAGCAAUCGGAAUGCGU-------------------------------------------------------- -------------------------------------------------------------------------GGAUG-GCUGAGAAC------------ ----------------------------------------------------------------------------------AAA--CCCUCAUC---AC CUGA-ACCGGAUAAU-------------------------------ACCGGCG-UAGG--AA-ACUCUCCGUCUGACUAUCU-3' |
| RS003642 (Porphyromonas gingivalis W83) | 5'-AGACCGCUACGGGGGUGCUUGCCGGCAAGAAUUGCGAUAC--------------------------------------------------------- -------------------------------------------------------------------------GGCAG-GCUGAGAUA------------ ----------------------------------------------------------------------------------AUA--CCCAUAG----AC CUGA-UCCGGAUAAU-------------------------------ACCGGCG-GAGG--GA--UGUAGAAUCGAAUACACA-3' |
| RS003643 (Synechococcus sp. WH 8102) | 5'-AAACACCACUAGGGGUGCCUCGAUCGGUUUUCUGGUCG----------------------------------------------------------- -------------------------------------------------------------------------ACGGG-GCUGAGAUC------------ ----------------------------------------------------------------------------------ACA--CCCUCUGA---AC CUGA-CCCGGGUCAU-------------------------------GCCGGCG-AAGG--GA---AGUGACCAGCGUGAUCG-3' |
| RS003644 (Prochlorococcus marinus subsp. pastoris str. CCMP1986) | 5'-AAAUAUAACUAGGGGUGCUAAGUCAAUU--------------------------------------------------------------------- -------------------------------------------------------------------------ACUUA-GCUGAGAUC------------ ----------------------------------------------------------------------------------AUA--CCCUUCGA---AC CUGA-AACAGUUAAA-------------------------------ACUGACG-CAGG--AA---AGUUUCAAUUUGAUCGA-3' |
| RS003645 (Prochlorococcus marinus subsp. marinus str. CCMP1375) | 5'-AAAUAUCACUAGGGGUGCCUACAAGCUAUUGC----------------------------------------------------------------- -------------------------------------------------------------------------UUUUG-GCUGAGAUC------------ ----------------------------------------------------------------------------------ACA--CCCUCUGA---AC CUGA-UUCGGUUUAU-------------------------------ACCGUCG-AAGG--AA---AGUGAAAGAGAGUGAUC-3' |
| RS003646 (Prochlorococcus marinus str. MIT 9313) | 5'-GCAAAACACUAGGGGUGCCAUUCAGCAAUCGCU---------------------------------------------------------------- -------------------------------------------------------------------------GAGUG-GCUGAGAUC------------ ----------------------------------------------------------------------------------ACA--CCCUCCGA---AC CUGA-UACGGGUUGU-------------------------------GCCGGCG-CAGG--GA---AGUGAAAUGACGUGAUC-3' |
| RS003647 (Deinococcus radiodurans R1) | 5'-UCGCGUCACCGGGGGUGCCCUGCUUCGG--------------------------------------------------------------------- -------------------------------------------------------------------------CAGCG-GCUGAGAAC------------ ----------------------------------------------------------------------------------ACA--CCCCAGGA---AC CUGA-ACCGGGUCAU-------------------------------UCCGGCG-GAGG--GA--GUGUGAUGCUCUGCUCCG-3' |
| RS003648 (Deinococcus radiodurans R1) | 5'-CAUCGUCAACAGGGGUGCCUCCGCAUAUGGGC----------------------------------------------------------------- -------------------------------------------------------------------------CGGAG-GCUGAGAGGGCAACU------ ----------------------------------------------------------------------------CGGGCCUAA--CCCUAUGA---AC CUGA-ACUGGUUAGC-------------------------------ACCAGCG-GAGG--GA--GUGUGACGGGCGCAGAGA-3' |
| RS003649 (Bacillus subtilis) | 5'-GAUGACCACAAGGGGAGCAUU---------------------------------------------------------------------------- ---------------------------------------------------------------------------AAA-GCUGAGAGUGAGCGGUU---- ---------------------------------------------------------------------------UCGUUC-UGA--CCCUUUGA---AC CUG--U-UAGUUAAC-------------------------------GCUGGCG-UAGG--GA---UGUGGCAAAUGCAAUAG-3' |
| RS003650 (Bacillus subtilis subsp. subtilis str. 168) | 5'-GAUUCAUCCUAGGGGUGCUUUG--------------------------------------------------------------------------- --------------------------------------------------------------------------CGAA-GCUGAGAGAGACU-------- ----------------------------------------------------------------------------UUGUCUCAA--CCCUUUUG---AC CUGA-UCUGGAUCAU-------------------------------GCCAGCG-GAGG--GA---AGCGGUGAAAAGCGGAG-3' |
| RS003651 (Bacillus subtilis subsp. subtilis str. 168) | 5'-GAUGACCACAAGGGGAGCAUU---------------------------------------------------------------------------- ---------------------------------------------------------------------------AAA-GCUGAGAGUGAGCGGUU---- ----------------------------------------------------------------------------UCGUUCUGA--CCCUUUGA---AC CUG--U-UAGUUAAC-------------------------------GCUGGCG-UAGG--GA---UGUGGCAAAGUCAAAUG-3' |
| RS003652 (Bacillus methanolicus) | 5'-AAAAAACUAUUAGGGUGCCCGUAG------------------------------------------------------------------------- -------------------------------------------------------------------------UAUGG-GUUUAGAAA------------ ----------------------------------------------------------------------------------AAA--CCUUUUGG---AC UUGA-UAUGGAUCAU-------------------------------ACCAGCU-UAGG--AA--AGUAGUGUAAUUUUUUCC-3' |
| RS003653 (Bacillus subtilis) | 5'-AAUAGUUACUGGGGGUGCCCGCUU------------------------------------------------------------------------- --------------------------------------------------------------------------UCGG-GCUGAGAGAGAAGGCAA---- ----------------------------------------------------------------------------GCUUCUUAA--CCCUUUGG---AC CUGA-UCUGGUUCGU-------------------------------ACCAGCG-UGGG--GA---AGUAGAGGAAUUGUUUU-3' |
| RS003654 (Bacillus subtilis subsp. subtilis str. 168) | 5'-UUUAACCACUAGGGGUGUCCUUCA------------------------------------------------------------------------- -------------------------------------------------------------------------UAAGG-GCUGAGAUAAAAGUGUG---- ----------------------------------------------------------------------------ACUUUUAGA--CCCUCAUA---AC UUGA-ACAGGUUCAG-------------------------------ACCUGCG-UAGG--GA---AGUGGAGCGGUAUUUGU-3' |
| RS003655 (Bacillus firmus) | 5'-UAGUUCCACUAGGGGUGUCAGUUU------------------------------------------------------------------------- -------------------------------------------------------------------------GUCUG-ACUGAGAGAGGGA-------- -----------------------------------------------------------------------------AGCCUCAA--CUCUUAAA---AC CUGA-UCUAGCUUGU-------------------------------ACUAGCG-UAGG--GA---AGUGGUGGCACAUUCUA-3' |
| RS003656 (Bacillus subtilis) | 5'-GGAAAGCACUAGGGGUGCUGU---------------------------------------------------------------------------- --------------------------------------------------------------------------UUUG-GCUGAGAUAAAGCGCGGAAGA AACG------------------------------------------------------------------------CGCUUUGAU--CCCUUAUG---AC CCGA-UCUGGAUAAU-------------------------------ACCAGCG-UGGG--GA---AGUGCAGGUUGACCGAA-3' |
| RS003657 (Bacillus subtilis) | 5'-UUUAACCACUAGGGGUGUCCUUCA------------------------------------------------------------------------- -------------------------------------------------------------------------UAAGG-GCUGAGAUAAAAGUGUG---- ----------------------------------------------------------------------------ACUUUUAGA--CCCUCAUA---AC UUGA-ACAGGUUCAG-------------------------------ACCUGCG-UAGG--GA---AGUGGAGCGUAUUUGUG-3' |
| RS003658 (Bacillus cereus group.Viruses.Viruses.Viruses.Viruses) | 5'-UGAAACCACUAGGGGUGCUUG---------------------------------------------------------------------------- --------------------------------------------------------------------------UUGU-GCUGAGAGAGGAAU------- ----------------------------------------------------------------------------AAUCCUUAA--CCCUUAUAAC-AC CUGA-UCUAGGUAAU-------------------------------ACUAGCG-AAGG--GA---AGUGGAACAACGAAUAA-3' |
| RS003659 (Bacillus phage phBC6A52) | 5'-AAUUAAGGACCGGGGAGCCAA---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUG-GCUGAGAGGAUGUAAGU---- ---------------------------------------------------------------------------AAACAUC-GA--CCCUCA-----AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA--GUUACUUAAAGUGAUGUA-3' |
| RS003660 (Bacillus cereus group.Viruses.Viruses.Viruses.Viruses) | 5'-AAUAAGCAC-AUGGGAGUUUGUGGA------------------------------------------------------------------------ -------------------------------------------------------------------------UGCAA-ACUGAGAGUAUGACUAUUC-- ---------------------------------------------------------------------------CGUCAU-UGA--CCAUUUGA---AC CUG--U-UGGAUAAU-------------------------------GCCAGCG-UAGG--GA--GAGUGUAAAAGCACAUGU-3' |
| RS003661 (Bacillus phage phBC6A52) | 5'-UAAGAAACACAUGGGAGUUUGUGGA------------------------------------------------------------------------ -------------------------------------------------------------------------UACAA-ACUGAGAGUAUGGCUACUAGU C--------------------------------------------------------------------------CGUCAU-UGA--CCAUUUGA---AC CUG--U-UGGAUAAU-------------------------------GCCAGCG-UAGG--GA-GAGUGUAAAAGCACAUAUU-3' |
| RS003662 (Bacillus phage phBC6A52) | 5'-CGUUAUCACUGGGGGAGCCAU---------------------------------------------------------------------------- ---------------------------------------------------------------------------GCC-GCUGAGAGGGAACACU----- ---------------------------------------------------------------------------UCGUUCC-GA--CCCUUCGA---AC CUG---UUAGUUAAU-------------------------------GCUAACG-CAGG--GA--UUGUGCAAACGUCCGAAA-3' |
| RS003663 (Bacillus phage phBC6A52) | 5'-AUAGUUUGCUAGGAGAGCUGGUGU------------------------------------------------------------------------- -------------------------------------------------------------------------UGCCA-GCUGAGAGUAGGCCGUA---- ----------------------------------------------------------------------------AGCCUUUGA--UCCUUUUUAUUAC CUGA-UCUAGAUUAU-------------------------------GCUAGCG-UAGG--GA---AGCAAUUCGGACACUAA-3' |
| RS003664 (Bacillus phage phBC6A52) | 5'-UGAAACCACUAGGGGUGCUUG---------------------------------------------------------------------------- --------------------------------------------------------------------------ACUU-GCUGAGAGAGGAAU------- ----------------------------------------------------------------------------AAUCCUUAA--CCCUUACAAC-AC CUGA-UCUAGGUAAU-------------------------------ACUAGCG-AAGG--GA---AGUGGAACAUCGAAUAA-3' |
| RS003665 (Bacillus cereus group.Viruses.Viruses.Viruses.Viruses) | 5'-AAUUAAGGACCGGGGAGCCAA---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUG-GCUGAGAGGAUGUGAGC---- ---------------------------------------------------------------------------AAACAUC-GA--CCCUCA-----AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA--GUUACUUAAAGUAAUGUA-3' |
| RS003666 (Bacillus phage phBC6A52) | 5'-UUCAUCCACUAGGGGGGCCUUUU-------------------------------------------------------------------------- --------------------------------------------------------------------------AUAG-GCUGAGAUCAAAUGUG----- ----------------------------------------------------------------------------AUUUUGAGA--CUCUUAGU---AC CUGA-UCUGGUUAAU-------------------------------GCCAGCG-UAGG--GA---AGUGGGAAAGACGUUGC-3' |
| RS003667 (Bacillus cereus group.Viruses.Viruses.Viruses.Viruses) | 5'-GUGAUAAACUAGGGGUGCCUAACGUAUG--------------------------------------------------------------------- -------------------------------------------------------------------------CGUAG-GCUGAGAGAGAAGCGCGUAA- ----------------------------------------------------------------------------ACUUCUUAA--CCCUUUGG---AC CUGA-UCUGGCUCGU-------------------------------ACCAGCG-UAGG--GA---AGUUAACGGCUUUACAU-3' |
| RS003668 (Bacillus cereus ATCC 10987) | 5'-GUGAUAAACUAGGGGUGCCUAACGUAUG--------------------------------------------------------------------- -------------------------------------------------------------------------CGUAG-GCUGAGAGAGAAGCGCGUGA- ----------------------------------------------------------------------------ACUUCUUAA--CCCUUUGG---AC CUGA-UCUGGCUCGU-------------------------------ACCAGCG-UAGG--GA---AGUUAACGGCUUUACAU-3' |
| RS003669 (Bacillus cereus ATCC 10987) | 5'-UACUAAACACAUGGGAGUUUGUGGA------------------------------------------------------------------------ -------------------------------------------------------------------------UACAA-ACUGAGAGUAUGACUAGUC-- ---------------------------------------------------------------------------CGUCAU-UGA--CCAUUUGA---AC CUG--U-UGGAUAAU-------------------------------GCCAGCG-UAGG--GA-GAGUGUAAAAGCACAUGUU-3' |
| RS003670 (Bacillus cereus ATCC 10987) | 5'-AAUUAAGGACCGGGGAGCCAA---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUG-GCUGAGAGGAUGUGAGU---- ---------------------------------------------------------------------------AAACAUC-GA--CCCUCA-----AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA--GUUACUUAAAGUGAUGUA-3' |
| RS003671 (Bacillus cereus ATCC 10987) | 5'-CGUUAUCACAGGGGGAGCCAU---------------------------------------------------------------------------- ---------------------------------------------------------------------------GCC-GCUGAGAGGGAACACU----- ----------------------------------------------------------------------------UCGUUCCGA--CCCUUCGA---AC CUG---UUAGUUAAU-------------------------------GCUAACG-CAGG--GA--UUGUGCAAACGUCCGAAA-3' |
| RS003672 (Bacillus cereus ATCC 10987) | 5'-AUAGUUUGCUAGGAGAGCUGGUGU------------------------------------------------------------------------- -------------------------------------------------------------------------UGCCA-GCUGAGAGUAAGGCCUUA--- ---------------------------------------------------------------------------AGUCUUUGA---UCCUUUUUAUUAC CUGA-UCUAGAUUAU-------------------------------GCUAGCG-UAGG--GA---AGCAAUUCGGACACUAA-3' |
| RS003673 (Bacillus cereus ATCC 10987) | 5'-UUUAUCCACUAGGGGGGCCUAUU-------------------------------------------------------------------------- --------------------------------------------------------------------------AUAG-GCUGAGAUCAAAUUGG----- ----------------------------------------------------------------------------AAUUUGAGA--CUCUUAGU---AC CUGA-UCUGGUUAAU-------------------------------GCCAGCG-UAGG--GA---AGUGGGAAAGACAUUGC-3' |
| RS003674 (Bacillus cereus ATCC 10987) | 5'-UGAAACCACUAGGGGUGCUUG---------------------------------------------------------------------------- --------------------------------------------------------------------------UUGU-GCUGAGAGAGGAAU------- ----------------------------------------------------------------------------AAUCCUUAA--CCCUUACAG--AC CUGA-UCUAGGUAAU-------------------------------ACUAGCG-AAGG--GA---AGUGGAGCAACGAAUAA-3' |
| RS003675 (Listeria monocytogenes) | 5'-CGUUACCACAGGGGGGGCUUC---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUA-GCUGAGAUUGAGUCCACGUGU UUUU-----------------------------------------------------------------------GGAUUCUGA---CCCUUUGA---AC CUGU-UC--GUUAAU-------------------------------ACGAGCG-UAGG--GA--UUGUGGCGAUUGCAUUUC-3' |
| RS003676 (Listeria innocua) | 5'-CGUUACCACAGGGGGGGCUUC---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUA-GCUGAGAUUGAAUCCGCGUGU UUUU-----------------------------------------------------------------------GGAUUCUGA--CCCUUUGA----AC CUGU-UC--GUUAAU-------------------------------ACGAGCG-UAGG--GA--UUGUGGCGAUUGCAUUUC-3' |
| RS003677 (Listeria innocua) | 5'-AAGAAAAACUAGGGGGGCCGAU--------------------------------------------------------------------------- --------------------------------------------------------------------------UCUG-GCUGAGAUAGGAAGGUAAU-- ---------------------------------------------------------------------------GCUUUCUGA---CCCUUUGA---AC CUG--U-UUGUUAGU-------------------------------GCAAGCG-UAGG--GA---AGUGAAUGUGAAAGUGA-3' |
| RS003678 (Staphylococcus epidermidis ATCC 12228) | 5'-UAGUAUCACUAGGGGUGCAAUUCA------------------------------------------------------------------------- --------------------------------------------------------------------------AUUU-GCUGAGAGAAAGUC------- ----------------------------------------------------------------------------UACUUUCAA--CCCUUGA----AC CUG--U-UGGUUAGC-------------------------------ACCGGCG-UAGG--AA---AGUGAGCAAUAUUGAUA-3' |
| RS003679 (Staphylococcus epidermidis) | 5'-UAGUAUCAUUAGGGGUGCAAUUCA------------------------------------------------------------------------- --------------------------------------------------------------------------AUUU-GCUGAGAGAAAGUC------- ----------------------------------------------------------------------------UACUUUCAA--CCCUUGA----AC CUG--U-UGGUUAGC-------------------------------ACCAGCG-UAGG--AA---AGUGAGCAAUAUUGAUA-3' |
| RS003680 (Staphylococcus epidermidis) | 5'-AUUUGCUACUAGGGGAGCCAA---------------------------------------------------------------------------- ---------------------------------------------------------------------------AAG-GCUGAGAUGAAUG-------- -----------------------------------------------------------------------------UAUUCAGA--CCCUUAUA---AC CUGA-UUUGGUUAAU-------------------------------ACCAACG-UAGG--AA---AGUAGUUAUUAACUAUU-3' |
| RS003681 (Staphylococcus epidermidis ATCC 12228) | 5'-UGAACGCACUAGGGGUGUAUU---------------------------------------------------------------------------- --------------------------------------------------------------------------CUUU-ACUGAGAUGAGGCC------- ----------------------------------------------------------------------------AACCUCAAA--CCCUUCGA---AC CUGA-UCUAGCUAGUU------------------------------ACUAGCG-UAGG--AA---AGUGUUGUUAUACAUCU-3' |
| RS003682 (Staphylococcus epidermidis ATCC 12228) | 5'-UAUAUGCACUAGGGGUGUUUU---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUA-ACUGAGAUGGAUA-------- ----------------------------------------------------------------------------UCAUCCAAA--CCCUUUGA---AC CUGA-ACUAGCUUAU-------------------------------ACUAGCG-GAGG--AA---AGUGUUGAAUCUCAUCU-3' |
| RS003683 (Staphylococcus epidermidis ATCC 12228) | 5'-UUUAACCACUGGAAGUGCCUUUGU------------------------------------------------------------------------- -------------------------------------------------------------------------UUAAG-GCUGAGAGUAAAGAACUG--- ----------------------------------------------------------------------------ACUUUAUAA--UUCCUGGA---AC CUGA-UCCAGUUCAU-------------------------------ACUGGCG-UAGG--GA---AGUGGCGACGCUCAAUU-3' |
| RS003684 (Staphylococcus carnosus) | 5'-UAAAAUUGCUAGGGGCGCCUU---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUG-GCUGAGAUAGUUU-------- ------------------------------------------------------------------------------GACUAGA--CCCUUAUA---AC CUGA-UUUGGUUCGU-------------------------------ACCAACG-UAGG--AA---AGUAGUAUAUUCAGAAU-3' |
| RS003685 (Clostridium tetani E88) | 5'-AAAUAAAUUUAGGGGAGCUUAUAAA------------------------------------------------------------------------ -------------------------------------------------------------------------AAUAG-GCUGAGAAAGAGAUGU----- ---------------------------------------------------------------------------UAUCUCUGA---CCCUCAUA---AC CUGA-UUUGGCUAAU-------------------------------ACCAACG-UAGG--GA---ACAUUGUGUAUUGUAGU-3' |
| RS003686 (Clostridium acetobutylicum ATCC 824) | 5'-AAUAUUUUUCAGGGGAGCUUGUUU------------------------------------------------------------------------- --------------------------------------------------------------------------UCAG-GCUGAGAGGAAGUAAUU---- ----------------------------------------------------------------------------GAACUUCGA--UCCAUAU----AC CUGA-UUUGGAUAAU-------------------------------GCCAACG-UAGG--AA---AUAGGUUACUUGAUUUA-3' |
| RS003687 (Clostridium acetobutylicum ATCC 824) | 5'-UUUUAGUGCUAGGGGUGCCUU---------------------------------------------------------------------------- ---------------------------------------------------------------------------UUG-GCUGAGAGAAGUUAAA----- ----------------------------------------------------------------------------AAACUUUAA--CCCUUUGA---AC CUGA-UUCGGUUAAU-------------------------------UCUGACG-AAGG--AA---AGCUUUUUAAAUGAUUA-3' |
| RS003688 (Clostridium acetobutylicum ATCC 824) | 5'-AUAUAGUUAACGGGGAGCCUGUAG------------------------------------------------------------------------- --------------------------------------------------------------------------ACAG-GCUGAGAGUGGAAUGU----- ---------------------------------------------------------------------------GAUUCCA-GA--CCCUCAUA---AC CUGA-UUUGGAUAAU-------------------------------GCCAACG-UAGG--GA--GUUAAUGCAUCAUGUUUG-3' |
| RS003689 (Clostridium acetobutylicum ATCC 824) | 5'-UAUUUUAGCUAGGGGUGCCUUUUAAGGCUUUUAUAGUUGAUAUCAUUAAAAAUAUUUAACUAAUAAAAGAC-------------------------- -------------------------------------------------------------------------UUUAG-GCUGAGAGGAGA--------- ------------------------------------------------------------------------------AAUCCAA--CCCUUUGA---AC UUGA-UGUAGUUAAU-------------------------------ACUACCG-UAGG--GA---AGCAGUGCAUUGUAUAU-3' |
| RS003690 (Clostridium tetani E88) | 5'-AUAAAGUUUCAGGGGAGCUGGUUUA------------------------------------------------------------------------ -------------------------------------------------------------------------UGUCA-GCUGAGAGUAAGAACUAA--- ----------------------------------------------------------------------------AUUCUUAGA--CCCUUUA----AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA---GAUGGUUUACUAUAUAA-3' |
| RS003691 (Clostridium acetobutylicum ATCC 824) | 5'-UAUAUGUGCUAGGGGUGCCUU---------------------------------------------------------------------------- ---------------------------------------------------------------------------UAG-GCUGAGAAACAGUUUG----- ----------------------------------------------------------------------------UCACGUUAA--CCCUUA-----AC CUGA-UCUGGAUAAU-------------------------------ACCAGCG-UAGG--GA---AGCAGUU-----------3' |
| RS003692 (Clostridium tetani E88) | 5'-AUGUAGUGCUAGGGGUGCUAUAU-------------------------------------------------------------------------- --------------------------------------------------------------------------AAGA-GCUGAGAAAUGAAUUAUUUAU GAUCA-----------------------------------------------------------------------AUUCAUUAA--CCCUUGU----AC CUGA-ACUAGAUAAU-------------------------------UCUAGCG-UAGG--GA---AGCCUUUUAUAGAUAUA-3' |
| RS003693 (Thermoanaerobacter tengcongensis MB4) | 5'-UCAAAGUGCUAGGGGAGCCAGA--------------------------------------------------------------------------- --------------------------------------------------------------------------AAUG-GCUGAGAGGGGAUU------- ----------------------------------------------------------------------------CGUUCCCGA--CCCUUAGA---AC CUGA-CCAGGGUAAU-------------------------------GCCUGCG-AAGG--GA---AGCACGUUUUACGGAAU-3' |
| RS003694 (Thermoanaerobacter tengcongensis MB4) | 5'-UAUGUCCGCUGGGGGAGCCUGA--------------------------------------------------------------------------- --------------------------------------------------------------------------AAAG-GCUGAGACGGCAGA------- ----------------------------------------------------------------------------AAUGCCGAA--CCCUUGGA---AC CUGA-UGAGGGUAAU-------------------------------GCCUCCG-UAGG--GA--AUGCGGGCUCAAAAGGCA-3' |
| RS003695 (Thermoanaerobacter tengcongensis MB4) | 5'-CUCAAGUGCUAGGGGAGCCAAA--------------------------------------------------------------------------- --------------------------------------------------------------------------AAUG-GCUGAGAGGGGAUU------- ----------------------------------------------------------------------------CGUUCCCGA--CCCUUAGA---AC CUGA-CCAGGGUAAU-------------------------------GCCUGCG-AAGG--GA---AGCACGUUUUACGAAAU-3' |
| RS003696 (Thermoanaerobacter tengcongensis MB4) | 5'-CUCAAGUGCUAGGGGAGCCAGA--------------------------------------------------------------------------- --------------------------------------------------------------------------AAUG-GCUGAGAGGGGAUU------- ----------------------------------------------------------------------------CGUUCCCGA--CCCUUAGA---AC CUGA-CCAGGGUAAU-------------------------------GCCUGCG-AAGG--GA---AGCACGUUUUAUUGAGU-3' |
| RS003697 (Enterococcus faecalis V583) | 5'-AAAAAACAUUUGGGGUGCUGU---------------------------------------------------------------------------- --------------------------------------------------------------------------UAUG-GCUGAGAU------------- ---------------------------------------------------------------------------------GAUA--CCCAUUGA---AC CUGA-UGCAGUUAGU-------------------------------ACUGUCG-CAGG--GA---AAUGCCGAUUUACUUUG-3' |
| RS003698 (Enterococcus faecalis V583) | 5'-GAGAAACAUUUGGGGUGCUA----------------------------------------------------------------------------- ---------------------------------------------------------------------------UUA-GCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CCCAUGGA---AC CUGA-AACAGUUAGG-------------------------------ACUGGCG-CAGG--GA---AAUGUCUUGAAAUUUUG-3' |
| RS003699 (Siphoviridae) | 5'-UAAAUACAUCUGGGGUGCCUA---------------------------------------------------------------------------- --------------------------------------------------------------------------UCGG-GCUGAGAAU------------ ----------------------------------------------------------------------------------AUA--CCCAUUGA---AC CUG--UUUGAUUAAU-------------------------------AUCAGCG-UAGG--GA--AAAUGACUAUUUUUAGAC-3' |
| RS003700 (Lactobacillus plantarum WCFS1) | 5'-UCAUAGCAACUGGGGUGCCAU---------------------------------------------------------------------------- --------------------------------------------------------------------------CACG-GCUGAGAUA------------ ----------------------------------------------------------------------------------AUA--CCCAUUGA---AC CUGAAUCUGGACAAU-------------------------------GCCAGCG-CAGG--GA-GCAAUGCUUUUAUUUGGGG-3' |
| RS003701 (Lactobacillus plantarum WCFS1) | 5'-UUUAAACACUAGGGGUGUCCAAAA------------------------------------------------------------------------- --------------------------------------------------------------------------AUGG-GCUGAGAUGGUGCUGUA---- ----------------------------------------------------------------------------AGUACCGAU--CCCUUUGA---AC CUG--U-AAGCUCAA-------------------------------ACUUGCG-UAGG--AA---AGUGUCACAGCUAAUGU-3' |
| RS003702 (Lactobacillus casei) | 5'-ACCUUCACAAAGGGGAGCCA----------------------------------------------------------------------------- ---------------------------------------------------------------------------UUG-GCUGAGAACGGGG-------- ---------------------------------------------------------------------------AAACCCGGA--CCCUUCGA----AC CUGU-UC--GUUAAU-------------------------------GCGAGCG-UAGG--GA--UUUGUGAAUGGU-------3' |
| RS003703 (Lactococcus lactis subsp. lactis Il1403) | 5'-UAUUUGCACAAUGGGUCUAUUGACAAAACUG------------------------------------------------------------------ -------------------------------------------------------------------------UCAGU-AGCGAGAA------------- ----------------------------------------------------------------------------------AUA--CCAUCUG----AC CUGA-UCUGGGUAAU-------------------------------GCCAGCG-UAGG--AA---UGUGUUAAGACAAAUGU-3' |
| RS003704 (Streptococcus pneumoniae R6) | 5'-AACAACCACUAGGGGUGCGU----------------------------------------------------------------------------- ---------------------------------------------------------------------------AAA-GCUGAGAUUAACGA------- ----------------------------------------------------------------------------CUGUUAGAU--CCCUCUG----AC UCAA-UCUAGGUAAU-------------------------------GCUAGCU-GAUG--GA---AGUGGAAAUGAUAAUGG-3' |
| RS003705 (Streptococcus criceti) | 5'-AGGCGUCACAAGAGGAGCUU----------------------------------------------------------------------------- ----------------------------------------------------------------------------UU-GCUGAGAAUGACCUCCAGUUU UAAGUAAAUUCCAUAACAUUGGAGUUUUGCGCAAAGUCUGG-----------------------------------GUGUCUAAA--CUCUUUGA---AC CUGA-ACAAGGUAAU-------------------------------GCUUGCGUAAGG--GA---UGUGCAGAAAUAAGUGG-3' |
| RS003706 (Streptococcus pneumoniae R6) | 5'-UACAGUCUGAGAGGAAGUGU----------------------------------------------------------------------------- ---------------------------------------------------------------------------UAA-ACU----UC------------ -----------------------------------------------------------------------------------GA--CCGC-------AC CUGA-UCUGGGUAAU-------------------------------GCCAGCG-GAGG--GA--ACGAUACUUAGUCUAAUU-3' |
| RS003707 (Streptococcus agalactiae 2603V/R) | 5'-AAAUACACAAGGGAGUGCCU----------------------------------------------------------------------------- ---------------------------------------------------------------------------UGA-GCUGAGAUUGCAGA------- ----------------------------------------------------------------------------UAUGCAAAA--UCCUCUA----AC CUGA-UCUCGUUAGG-------------------------------ACGAGCG-UAGG--AA---UUGUGGUUUGAAUUGGU-3' |
| RS003708 (Streptococcus pneumoniae R6) | 5'-UAAAGACAUUUGGGGUGCUU----------------------------------------------------------------------------- ---------------------------------------------------------------------------UAG-GCUGAGAU------------- ---------------------------------------------------------------------------------GAUA--CCCAUUGA---AC CUGA-UACAGUUAAG-------------------------------ACUGGCG-AAGG--GA---AAUGUGAAAUGUUUUUU-3' |
| RS003709 (Streptococcus agalactiae NEM316) | 5'-AUAGGACAUUUGGGGUGCGUA---------------------------------------------------------------------------- ---------------------------------------------------------------------------ACA-GCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CCCAUUGA---AC UUGA-UACAGUUAGU-------------------------------ACUGUCG-AAGG--GA---AAUGUGUGCCAUUACAA-3' |
| RS003710 (Streptococcus mutans UA159) | 5'-AAAUAUCACAAGGAGUGCUAAC--------------------------------------------------------------------------- --------------------------------------------------------------------------CUUA-GCUGAGAUUGCAU-------- -----------------------------------------------------------------------------UUGCAAAA--UCCUAUGG---AC CUGA-UCUAGUUAAU-------------------------------ACUAGCG-UGGG--AA---UGUGAUUCGUUUCAUGA-3' |
| RS003711 (Streptococcus pneumoniae TIGR4) | 5'-UAGAGACAUUUGGGGUGCUU----------------------------------------------------------------------------- ---------------------------------------------------------------------------UAG-GCUGAGAUA------------ ----------------------------------------------------------------------------------AUA--CCCAUUGA---AC CUGA-UACAGUUAAG-------------------------------ACUGGCG-AAGG--GA---AAUGUGAACAGUUUUUU-3' |
| RS003712 (Streptococcus pneumoniae R6) | 5'-UAGAGACAUUUGGGGUGCUU----------------------------------------------------------------------------- ---------------------------------------------------------------------------UAA-GCUGAGAU------------- ---------------------------------------------------------------------------------GAUA--CCCAUUGA---AC CUGA-UACAGUUAAG-------------------------------ACUGGCG-AAGG--GA---AAUGUGAAACGUUUUUU-3' |
| RS003713 (Streptococcus agalactiae 2603V/R) | 5'-AUAGGACAUUUGGGGUGCGUA---------------------------------------------------------------------------- ---------------------------------------------------------------------------ACA-GCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CCCAUUGA---AC UUGA-UGCAGUUAGU-------------------------------ACUGUCG-AAGG--GA---AAUGUGUGCCAUUACAA-3' |
| RS003714 (Streptococcus pyogenes MGAS8232) | 5'-UAUUUCACAAAGGAGUGCUU----------------------------------------------------------------------------- ----------------------------------------------------------------------------UG-GCUGAGAUCGCAA-------- -----------------------------------------------------------------------------UUGCGAAA--UCCUGAGG---AC CUGA-UCUUGUUAGU-------------------------------ACAAGCG-UAGG--GA---UUGUGACCAAUAAUCAA-3' |
| RS003715 (Streptococcus pneumoniae TIGR4) | 5'-CAUAUAAUAUAUGGGAGUCUGUGU------------------------------------------------------------------------- --------------------------------------------------------------------------ACAG-UCUGAGAGGAAGUGUU----- ----------------------------------------------------------------------------AAACUUCGA--CCGC-------AC CUGA-UCUGGGUAAU-------------------------------GCCAGCG-GAGG--GAACGAUACUUAGUCUAAUUUU-3' |
| RS003716 (Mycoplasma gallisepticum R) | 5'-AAUCAAUAACAGAGGUACCUCUUUUAUCUUGGAUAA------------------------------------------------------------- -------------------------------------------------------------------------AAGAA-GUUGAGAA------------- ----------------------------------------------------------------------------------ACA--CUCUUAUG---AG CUGA-UCUGGUUAAC-------------------------------ACCAGCG-UAGC--GA---GUUAUAUCUCUCACAAG-3' |
| RS003717 (Mycoplasma mycoides subsp. mycoides SC str. PG1) | 5'-UAAAGUAAAUAAGGGUGCUGUA--------------------------------------------------------------------------- --------------------------------------------------------------------------AAAG-GCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CCUAUU-----AG CAGA-UCAUGGUAAU-------------------------------UCAUGCG-UGGCUAAA--GAUUUUUUACAGGUUAUG-3' |
| RS003718 (Mycoplasma hyorhinis) | 5'-UUAUUUCAACAGGGGAGCUGUA--------------------------------------------------------------------------- --------------------------------------------------------------------------AAAG-GCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CUCUAUA----AG UUGA-UCUAGAUAAU-------------------------------GCUAGCG-UAAC--GA---GUUGUUUUUUAUUUUCA-3' |
| RS003719 (Mycoplasma pulmonis) | 5'-AAACAUAGACAGGGGUACUUAUCUAUCAAAAAUAG-------------------------------------------------------------- -------------------------------------------------------------------------AUAUG-GUUGAGAUC------------ ----------------------------------------------------------------------------------AAA--CUCUUG-----AG CUGA-UCUAAUUAAU-------------------------------AUUAGCG-UAGC--GA---GUCUUUGGUAAAAUAAU-3' |
| RS003720 (Mycoplasma pulmonis) | 5'-UAACAAAGGCAGGGGUACUAUAUCUCACUGAAAAAGUAG---------------------------------------------------------- -------------------------------------------------------------------------GUAUG-GUUGAGAA------------- ----------------------------------------------------------------------------------AAA--CUCUUU-----AG CUGA-UCUAAUUAAU-------------------------------AUUAGCG-UAGC--GA---GACUUUAAAUUUCGUCU-3' |
| RS003721 (Caulobacter crescentus CB15) | 5'-GUCUGUUCACCGGGGGGCCGCUCG------------------------------------------------------------------------- --------------------------------------------------------------------------CGCG-GCUGAGAUUGGGCUC------ ---------------------------------------------------------------------------ACGCCCUGA---CCCGUAGA---AC CUGA-UCCGGGUCAU-------------------------------GCCGGCG-AAGG--GA---GGGAACGCGGACGACAG-3' |
| RS003722 (Rhodopseudomonas palustris CGA009) | 5'-GCCCGUUCCGAGGGGGGCUCCGAC------------------------------------------------------------------------- -------------------------------------------------------------------------GAGGA-GCUGAGAUACCGCACGCUCGC CGCUUCGCUCCGCGAGGCACAGAGA--------------------------------------------------CCGCGGUGA---CCCUUUGA---AC CUGA-UCCGGGUCAU-------------------------------GCCGGCG-AAGG--GA--CAGGGAUGCAUCAGACAG-3' |
| RS003723 (Brucella melitensis 16M) | 5'-GUCGCUCUAACGGGGUGCCAUCUGCUUUUGG------------------------------------------------------------------ -------------------------------------------------------------------------GGAUG-GCUGAGAGGCCAAACAAGGCA UUUCCAGCAAAAGCGUGAAACGGUUUUGCAUCAGGAAAUACUUGAAAACUG-------------------------CCCGGCCAA--CCCGCUGA---AC CUGA-UCCGGUUUGC-------------------------------ACCGGCG-GAGG--GA---UUAGACGCUCGAUGAAC-3' |
| RS003724 (Brucella melitensis 16M) | 5'-CAAAAUUCGUUGGGGUGCCUUGAA------------------------------------------------------------------------- --------------------------------------------------------------------------AGAG-GCUGAGAGACGCAUUC----- ----------------------------------------------------------------------------UCACGUCAA--CCCAUUGA---AC CUGA-UCCGGGUAAU-------------------------------ACCUGCG-UAGG--GA---ACGGAGUUUGGCGCGUC-3' |
| RS003725 (Mesorhizobium loti) | 5'-CGCAUUCACCAGGGGAGUCCCGGC------------------------------------------------------------------------- -------------------------------------------------------------------------AAGGG-GCUGAGAUACUGCUGGCUUUC GCG------------------------------------------------------------------------GCGCAGUGA---CCCGUUGA---AC CUGA-UCCAGUUCAU-------------------------------ACUGGCG-UAGG--GA--CGGUGCAAGCGCUUUGCG-3' |
| RS003726 (Agrobacterium tumefaciens str. C58) | 5'-AGCUCUUCCGAGGGGAGCACCAGA------------------------------------------------------------------------- --------------------------------------------------------------------------CGGU-GCUGAGAUGGUGG-------- ----------------------------------------------------------------------------UGAACCGGA--CCCUUGA----AC CUGA-UCCGGGUCAU-------------------------------GCCGGCG-UAGG--AA---CGGAACUGUCGUGCGCU-3' |
| RS003727 (Agrobacterium tumefaciens str. C58) | 5'-CUUGAUCUAACGGGGUGUCUUCUGUGCUUUUGUGC-------------------------------------------------------------- -------------------------------------------------------------------------AGAAG-GCUGAGAGGCU---------- -------------------------------------------------------------------------------UGCCAA--CCCGAAGA---AC CUGA-UCCGGUUCAU-------------------------------ACCGGCG-GAGG--GA---UUAGACGGCUUAAAGGC-3' |
| RS003728 (Agrobacterium tumefaciens str. C58) | 5'-GCCAUUCACCAGGGGUGUCCCGUC------------------------------------------------------------------------- -------------------------------------------------------------------------AAGGG-GCUGAGAUUCUGCUUUCAU-- -----------------------------------------------------------------------------GCGCAGUGA-CCCGUUGA---AC CUGA-UCCAGUUCAU-------------------------------ACUGGCG-UAGG--GA--CGGUGCAAAGACCUGAUG-3' |
| RS003729 (Rhizobium etli) | 5'-ACCAUUCACCAGGGGUGCCCCGGC------------------------------------------------------------------------- -------------------------------------------------------------------------AAGGG-GCUGAGAUUCUGCUGAACAAU ACGGCUUUGCCUGUUGUG----------------------------------------------------------GCGCGGUGA--CCCGUUGA---AC CUGA-UCCAGUUCAU-------------------------------ACUGGCG-UAGG--GA--CGGUGCGGACCUGCGGCU-3' |
| RS003730 (Rhizobium sp. NGR234) | 5'-CUCCAUUCCGAGGGGAGCGCCGGG------------------------------------------------------------------------- --------------------------------------------------------------------------CGGC-GCUGAGACGGCGG-------- ----------------------------------------------------------------------------UGAGCCGGA--CCCUUGA----AC CUGA-UCCGGGUCAU-------------------------------GCCGGCG-UAGG--AA---CGGAACGAGGCUGCCCU-3' |
| RS003731 (Sinorhizobium meliloti) | 5'-GCGCAUUCCGAGGGGAGCACUAGA------------------------------------------------------------------------- --------------------------------------------------------------------------CGGU-GCUGAGAUGGCGU-------- ----------------------------------------------------------------------------UGAGCCGGA--CCCUUGA----AC CUGA-UCCGGGUCAU-------------------------------GCCGGCG-UAGG--AA---CGGAAAGAAGGCCGCCA-3' |
| RS003732 (Sinorhizobium meliloti) | 5'-GCUGCUCUAACGGGGUGCCCUGGCCGGCUUUGCGA-------------------------------------------------------------- -------------------------------------------------------------------------CCAUG-GCUGAGAGGCUUC-------- ------------------------------------------------------------------------------GAGCCAA--CCCGCGGA---AC CUGA-UCCGGCUCAU-------------------------------ACCGGCG-GAGG--GA---UUAGAAGCGAUCGGACC-3' |
| RS003733 (Wolbachia endosymbiont of Drosophila melanogaster) | 5'-UACACGCAUUAGGGGUGCUCUAG-------------------------------------------------------------------------- --------------------------------------------------------------------------AAAA-GCUGAGAGUACAU-------- ----------------------------------------------------------------------------AAAGUACAA--CCCUUUGA---AC CUGA-UAUUGUUAAA-------------------------------GCAAGCG-UAGG--GA---AAUAUAUGUAUAUAAAU-3' |
| RS003734 (Bordetella parapertussis) | 5'-AGGAUCACGCAGGGGUACUCGCUGUCCCGCCUUCAAGGCCGGC------------------------------------------------------ -------------------------------------------------------------------------AGCGU-GUUGAGAG------------- ----------------------------------------------------------------------------------AGU--CCCUUCGU---AC CAG--UACGGAUAAU-------------------------------GCCGAUG-CUGG--GA---GCGUAUUCCAGUUGCCG-3' |
| RS003735 (Ralstonia solanacearum) | 5'-UGGAUGAAACAGGGGUGCCGUGCGGAUGGGCC----------------------------------------------------------------- -------------------------------------------------------------------------GCGCG-GCUGAGAG------------- ----------------------------------------------------------------------------------AGU--CCCUUCGC---AC CCGA-UCCGGUUCGU-------------------------------ACCGGCG-UGGG--AA---GUUUCUUCAGAACACCG-3' |
| RS003736 (Chromobacterium violaceum ATCC 12472) | 5'-CCCUGUCACCGGGGGUGCCCGCCA------------------------------------------------------------------------- -------------------------------------------------------------------------UGCGG-GCUGAGAG------------- ----------------------------------------------------------------------------------ACA--CCCUGAGA---AC CUGA-UCUGGAUCAU-------------------------------GCCAGCG-GAGG--GA--GCGUGAUGAAGCGGAAUC-3' |
| RS003737 (Chromobacterium violaceum ATCC 12472) | 5'-CGGCAUCGCUAGGGGUCCUGCGCCUGGCGUUCGGCGCAGAUGGCUAGCAAAGUGUAGGCCAUGGCGGCGGAUGACGGA------------------- -------------------------------------------------------------------------GCGCG-GGUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCCUUGGA---AC CUGA-CCCGGAUAAU-------------------------------ACCGGCG-UAGG--GA---AGCGUCACCUGCCCGCC-3' |
| RS003738 (Neisseria meningitidis Z2491) | 5'-GCUUUCUUGUCGGAGUGCCGCCGCC------------------------------------------------------------------------ -------------------------------------------------------------------------GGGCG-GCUGAGAUUGCGA-------- -----------------------------------------------------------------------------AAGCAGAA--UCCGUAGA---AC CUG--UCGGGGUAAU-------------------------------GCCUGCG-UAGG--AA---ACAAACCGUCAAAUGCC-3' |
| RS003739 (Neisseria meningitidis Z2491) | 5'-ACAUCGAAACAGGGGUGCUGCCUGAUGUUC------------------------------------------------------------------- -------------------------------------------------------------------------AGGCG-GCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCCUUUAC---AC CCGA-UCGGGAUAAU-------------------------------ACCUGCG-UGGG--GA---GUUUUCACGGAUUCUGC-3' |
| RS003740 (Nitrosomonas europaea ATCC 19718) | 5'-AGCUGUGGCUAGGGGUCCGCAUUUGCAGUUUUCUGCAA----------------------------------------------------------- -------------------------------------------------------------------------AUGCC-GGUGAGAG------------- ----------------------------------------------------------------------------------AGU--CCCUUAAU---AC CUGA-UGCGGAUAAC-------------------------------GCCGCCG-GAGG--GA---AGCCAGGAGUCACUCUC-3' |
| RS003741 (Bdellovibrio bacteriovorus) | 5'-ACCUGACGCUAGGGGUGUUGGUGAAUU---------------------------------------------------------------------- -------------------------------------------------------------------------CACCG-ACUGAGAA------------- ----------------------------------------------------------------------------------UAA--CCCUUUGA---AC CUGA-UAGAGAUAAU-------------------------------GCUCGCG-CAGG--GA---AGCAAGAAUAGAAAGAU-3' |
| RS003742 (Campylobacter jejuni subsp. jejuni NCTC 11168) | 5'-AACAUAAAUGACGGGAGCUUGUGU------------------------------------------------------------------------- -------------------------------------------------------------------------AACAG-GCUGAGAGUAAGCUAA----- ---------------------------------------------------------------------------AAGCUUA-GA--CCGA-------AC CGGA-UCUGGAUAAU-------------------------------ACCAGCG-UCGG--GA--AGAUUUAUAAAUUUCAAU-3' |
| RS003743 (Helicobacter pylori J99) | 5'-GGAGCAUUUAAGGGGUGCUUUUUAAAACGCUCAAGUUUUU--------------------------------------------------------- -------------------------------------------------------------------------AAAAG-GCUGAGAUC------------ ----------------------------------------------------------------------------------AAA--CCCGUAGA---AC UUG--UCAAGGUAAU-------------------------------UCUUGCG-UAAG--GA--AUAACAUGUUAAUAACCA-3' |
| RS003744 (Helicobacter pylori 26695) | 5'-AGCAUUUA--AGGGGUGCUUUUUAAAACGCUCAAGUUUUU--------------------------------------------------------- -------------------------------------------------------------------------AAAAG-GCUGAGAUC------------ ----------------------------------------------------------------------------------AAA--CCCGUAGA---AC UUG--UCAAGGUAAU-------------------------------UCUUGCG-UAAG--GA--A-AUAGCAUGUUAAUAAC-3' |
| RS003745 (Aeromonas hydrophila) | 5'-GCCAUCUUGUCGGAGUGCCAACCGUCGAACGAC---------------------------------------------------------------- -------------------------------------------------------------------------GCGAG-GCUGAGACCGUUA-------- -----------------------------------------------------------------------------AUUCGGGA--UCCGUGGA---AC CUGA-UCAGGCUAGC-------------------------------ACCUGCG-AAGG--GA--AACAAGGGUAACUUGCGG-3' |
| RS003746 (Shewanella oneidensis MR-1) | 5'-UGUUUGCCAAA----AUUCGG---------------------------------------------------------------------------- ---------------------------------------------------------------------------CAG-ACUGAGAUGUCAU-------- -----------------------------------------------------------------------------CAGACGAA--CCCUUAGA---AC CUGA-UCCGGCUAAU-------------------------------ACCGGCG-UAGG--AA---UGGGCCAAUCAACAGCA-3' |
| RS003747 (Shewanella oneidensis MR-1) | 5'-UGCCUUUUGGCUGAGACCGUUU--------------------------------------------------------------------------- --------------------------------------------------------------------------AUUC-GG------------------- -----------------------------------------------------------------------------------GA--UCCGUUGA---AC CUGA-UCAGGUUAAA-------------------------------ACCUGCG-AAGG--AA---ACAAGCAUAAUAACUUC-3' |
| RS003748 (Thiocystis violacea) | 5'-CCAUACUGCUGGGGGUGUCCGUGACGACCCGCUCGGCUUGGAUUUUCGGCGCUGGGCGCUCAGACGUCCAGCCGCUAUCCCUGCCGAGAGUUUCGCG U------------------------------------------------------------------------CUCGG-GCUGAGAAA------------ ----------------------------------------------------------------------------------AGA--CCCUUCGA---AC CUGA-UCCGGAUCAU-------------------------------GCUGGCG-CAGG--AA---AGCAGGCAAGACAGAGG-3' |
| RS003749 (Erwinia pyrifoliae) | 5'-AGUCCCUGUCAGGGGAGUCUCGCCA------------------------------------------------------------------------ -------------------------------------------------------------------------GAGAG-ACUGAGAGGCUAAUAGCGAUU UUCGCG---------------------------------------------------------------------GCUUAGC-GA--CCCUUAGA---AC CUGA-CCCAGCUGAU-------------------------------ACUGGCG-UAGG--AA---GACUCGUAUCUUGAUGA-3' |
| RS003750 (Erwinia amylovora) | 5'-GGUUCCUGUCAGGGGAGUCUCGCCA------------------------------------------------------------------------ -------------------------------------------------------------------------GAGAG-ACUGAGAGGCUGAUAGCGAUU UUCGCG---------------------------------------------------------------------GCUUAGC-GA--CCCUUAGA---AC CUGA-CCCAGCUGAU-------------------------------ACUGGCG-UAGG--AA---GACUCGUAUCUUGAUAA-3' |
| RS003751 (Escherichia coli CFT073) | 5'-CCGUUCUCAACGGGGUGCCACGCAGCC---------------------------------------------------------------------- -------------------------------------------------------------------------GCGUGCGCUGAGAAA------------ ----------------------------------------------------------------------------------AUA--CCCGUCGA---AC CUGA-UCCGGAUAAC-------------------------------GCCGGCG-AAGG--GA--UUUGAGGCUCCUUCUCAA-3' |
| RS003752 (Escherichia coli W3110) | 5'-CCGUUCUCAACGGGGUGCCACGCGUAC---------------------------------------------------------------------- -------------------------------------------------------------------------GCGUGCGCUGAGAAA------------ ----------------------------------------------------------------------------------AUA--CCCGUCGA---AC CUGA-UCCGGAUAAC-------------------------------GCCGGCG-AAGG--GA--UUUGAGGCUCCUUCUCAA-3' |
| RS003753 (Escherichia coli CFT073) | 5'-CCAAACGACUCGGGGUGCCCUUCUUUG---------------------------------------------------------------------- -------------------------------------------------------------------------UGAAG-GCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCCGUAUC---AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA---AGUCACGGACCACCAGG-3' |
| RS003754 (Photorhabdus luminescens subsp. laumondii TTO1) | 5'-ACUUUCUUGUCGGAGUGCCUAGCGUAAGCUGUUUUAUCGCAGCAUA--------------------------------------------------- -------------------------------------------------------------------------CACAG-GCUGAGACCGUUA-------- -----------------------------------------------------------------------------AUUCGGGA--UCCGCGGA---AC CUGA-UCGGGUUAAU-------------------------------ACCCGCG-AAGG--GA---ACAAGAGUAAUCAACCG-3' |
| RS003755 (Photorhabdus luminescens subsp. laumondii TTO1) | 5'-GCCAUCUCAACGGGGUGCUGGCUGUUUAAAACA---------------------------------------------------------------- -------------------------------------------------------------------------GCCUU-GCUGAGAGU------------ ----------------------------------------------------------------------------------AAA--CCCGCCGA---AC CUGA-UCCGGCUAAU-------------------------------ACCGGCG-UAGG--GA--UUUGAGCUGCUAACUAUU-3' |
| RS003756 (Salmonella enterica subsp. enterica serovar Typhi) | 5'-GUUAUCUUGUCGGAGUGCUAAUUUUCCACAAAAGCGUUCGUGAUGCGUCAAGGCGGCAAGUCGGUGAAUCUCCAGGAGCUUACAUAAGUAAGUGACU GGAGUGAGCGGACGAAGCCAACGAAGAGGCAGCGCGAAGGAUGAAGUGG------------------------AAAAG-GCUGAGACCGUUA-------- -----------------------------------------------------------------------------AUUCGGGA--UCCGCGGA---AC CUGA-UCAGGUUAAU-------------------------------ACCUGCG-AAGG--GA---ACAAGAGUAAUUCUGCU-3' |
| RS003757 (Salmonella enterica subsp. enterica serovar Typhi) | 5'-CCGAACUCAACGGGGUGCCGCGCUCAU---------------------------------------------------------------------- -------------------------------------------------------------------------GCGCGCGCUGAGAAA------------ ----------------------------------------------------------------------------------AUA--CCCGUCGA---AC CUGA-UCCGGAUAAU-------------------------------GCCGGCG-AAGG--GA--UUUGAGGCUACCUCUCAA-3' |
| RS003758 (Salmonella enterica subsp. enterica serovar Typhi Ty2) | 5'-CUUGACGACUCGGGGUGCCCUUCUUUG---------------------------------------------------------------------- -------------------------------------------------------------------------UGAAG-GCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCCGUACC---AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA---AGUCUGACACUGCUCGU-3' |
| RS003759 (Shigella flexneri 2a str. 2457T) | 5'-CCAAACGACUCGGGGUGCCCUUCUGCG---------------------------------------------------------------------- -------------------------------------------------------------------------UGAAG-GCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCCGUAUC---AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA---AGUCACGGACCACCAGG-3' |
| RS003760 (Shigella flexneri 2a str. 2457T) | 5'-CCGUUCUCAACGGGGUGCCACGCAAAC---------------------------------------------------------------------- -------------------------------------------------------------------------GCGUGCGCUGAGAAA------------ ----------------------------------------------------------------------------------AUA--CCCGUCGA---AC CUGA-UCCGGAUAAC-------------------------------GCCGGCG-AAGG--GA--UUUGAGGCUCCUUCUCAA-3' |
| RS003761 (Yersinia pestis CO92) | 5'-AGGCUCUUGUCGGAGUGCCUAGCACCUGCUUUUUUAGGAAAGCAAA--------------------------------------------------- -------------------------------------------------------------------------CGCAG-GCUGAGACCGUUA-------- -----------------------------------------------------------------------------AUUCGGGA--UCCGCGGA---AC CUGA-UCGGGUUAAU-------------------------------ACCCGCG-AAGG--GA---ACAAGAGUAAUUUAUCG-3' |
| RS003762 (Yersinia pestis CO92) | 5'-CAUUCUGACUCGGGGUGCCUGCCACAAUGCGGUG--------------------------------------------------------------- -------------------------------------------------------------------------GUAAG-GCUGAGAGA------------ ----------------------------------------------------------------------------------UGA--CCCGUAUU---AC CUGA-UCUGGAUUAU-------------------------------GCCAGCG-UAGG--GA---AGUCUCGGCACCGUAGG-3' |
| RS003763 (Yersinia pestis KIM) | 5'-ACCACCUAACCGC--CGCAAUUUU------------------------------------------------------------------------- --------------------------------------------------------------------------UUUC-GCUGAGAGU------------ ----------------------------------------------------------------------------------AAA--CCCGUCGA---AC CUGA-UCCGGUUAAC-------------------------------CCCGGCG-GAGG--GA---UUUGAGAAUGAUAACGA-3' |
| RS003764 (Haemophilus influenzae Rd KW20) | 5'-GACUUUUAGUCGGGGUGCCGA---------------------------------------------------------------------------- ---------------------------------------------------------------------------AAG-GCUGAGAU------------- ---------------------------------------------------------------------------------GAUA--CCCGUGA----AC CUGA-AACAGUUAGC-------------------------------ACUGACG-UAGG--AA---ACUAAUAUGCCACAUAU-3' |
| RS003765 (Haemophilus influenzae Rd KW20) | 5'-AGUUUUUAGUCGGGGUGCCGA---------------------------------------------------------------------------- ---------------------------------------------------------------------------AAG-GCUGAGAU------------- ---------------------------------------------------------------------------------GAUA--CCCGUGA----AC CUGA-AACAGUUAGC-------------------------------ACUGACG-UAGG--AA---ACUAAUAUGCCAAAAAA-3' |
| RS003766 (Haemophilus ducreyi 35000HP) | 5'-UUGUUCUCAUUGGGGUGCUGAAA-------------------------------------------------------------------------- --------------------------------------------------------------------------AUAA-GCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCCAUAGA---AC CUGA-UCUGAUUCGU-------------------------------AUCAGCG-UAGG--GA--UUUGAGGCCAUUUCUACU-3' |
| RS003767 (Haemophilus influenzae Rd KW20) | 5'-AAAGCCUAGUCGGGGUGCAA----------------------------------------------------------------------------- ---------------------------------------------------------------------------UAC-GCUGAGAUC------------ ----------------------------------------------------------------------------------AUA--CCCGUGA----AC CUGA-AACAGUUAAU-------------------------------ACUGACG-UAGG--AA---ACUAGGAAUAUAACCUU-3' |
| RS003768 (Histophilus somni) | 5'-CCGACUUAGUCGGGGUGCUGAU--------------------------------------------------------------------------- --------------------------------------------------------------------------AACA-GCUGAGAUA------------ ----------------------------------------------------------------------------------AUA--CCCGUGA----AC CUGA-UACAGUUAAU-------------------------------ACUGACG-UAGG--AA---ACUAAUGGUCUUACUCC-3' |
| RS003769 (Pasteurella multocida subsp. multocida str. Pm70) | 5'-GACUCUUAGUCGGGGUGCUAUUGC------------------------------------------------------------------------- --------------------------------------------------------------------------GUUA-GCUGAGAU------------- ---------------------------------------------------------------------------------GAUA--CCCGUGA----AC CUGA-UGCAGUUAAU-------------------------------ACUGACG-UAGG--AA---ACUAGCAGUCAAUAUUG-3' |
| RS003770 (Pasteurella multocida subsp. multocida str. Pm70) | 5'-GCACUUUAGUCGGGGUGCUUUGUAACCAAAUUGU--------------------------------------------------------------- -------------------------------------------------------------------------ACAAA-GCUGAGAU------------- ---------------------------------------------------------------------------------GAUA--CCCGUGA----AC CUGA-UACAGCUAAC-------------------------------ACUGACG-UAGG--AA---ACUAAUUAUGCCAAUAA-3' |
| RS003771 (Pseudomonas putida KT2440) | 5'-AGCGCCACCAAGGGGAGCCCGGCA------------------------------------------------------------------------- --------------------------------------------------------------------------AUGG-GCUGAGAAACCGCUGAACGCU ACA------------------------------------------------------------------------GCGCGGU-GA--CCCUUCGA---AC CUGA-UCCGGAUCAU-------------------------------GCCGGCG-AAGG--GA---UGGGGCUUGUAACCUGC-3' |
| RS003772 (Pseudomonas putida KT2440) | 5'-AUGUUCUUGUCGGGGUGCCUUGAAG------------------------------------------------------------------------ -------------------------------------------------------------------------CAAAG-GCUGAGAUCGCAGA------- ----------------------------------------------------------------------------GGUGCGGAU--CCCGUUGA---AC CUGA-UCAGGUUAGC-------------------------------GCCUGCG-UAGG--GA---ACAAGAUUGCUCGCCUU-3' |
| RS003773 (Pseudomonas aeruginosa PAO1) | 5'-GGGUUCUUGUCGGGGUGCCCUAUAC------------------------------------------------------------------------ -------------------------------------------------------------------------GAGGG-GCUGAGAUCGGAUA------- ----------------------------------------------------------------------------GUUCCGGAU--CCCGUUGA---AC CUGA-UCGGGCUAGC-GUCCGGUUCCGCCUCGCGCGGACCGCAGCAACCCGCG-UAGG--GA---ACAAGAUGUCCGCGCCA-3' |
| RS003774 (Vibrio cholerae O1 biovar eltor str. N16961) | 5'-GUCCUGUAGUCGGGGAGCCUGAGAGCGUAUAUACCCUUCUUACUUGAAGCUGCAGCGGUGUUGGCUACGUUCGUUCACCCCAAUCACAUAGUUUAUC UAUGCUCAUGGGGAUGAACUCACUUGUCGCCUACCUGCAACUCCAAGUAGUUUGGGUAUAACAACGUGCGAAUUAAAG-GCUGAGAUCGCG--------- -----------------------------------------------------------------------------UAGCGAGA--CCCGUUGA---AC CUGA-UUCAGUUAGG-------------------------------ACUGACG-UAGG--GA---ACUAUCCUCAACCGCUG-3' |
| RS003775 (Vibrio cholerae O1 biovar eltor str. N16961) | 5'-UUCCACUUGUCGGAGUGCCAU---------------------------------------------------------------------------- ---------------------------------------------------------------------------UGG-GCUGAGACCGUUU-------- -----------------------------------------------------------------------------AUUCGGGA--UCCGUUGA---AC CUGA-UCAGGUUAAU-------------------------------ACCUGCG-AAGG--GA---ACAAGAGAAGACUCUCU-3' |
| RS003776 (Vibrio vulnificus CMCP6) | 5'-UUUCACUUGUCGGAGUGCCUU---------------------------------------------------------------------------- ---------------------------------------------------------------------------AGG-GCUGAGACCGUUU-------- -----------------------------------------------------------------------------AUUCGGGA--UCCGUUGA---AC CUGA-UCAGGUUAGA-------------------------------ACCUGCG-AAGG--GA---ACAAGAGAAGAUACUUG-3' |
| RS003777 (Xanthomonas campestris pv. campestris str. ATCC 33913) | 5'-CCGCCGAAGUGGGGGUACCACAGCACUG--------------------------------------------------------------------- -------------------------------------------------------------------------CUGCG-GUUGAGAU------------- ----------------------------------------------------------------------------------AGU--CCCUUCGA---AC CUGA-UCCGGCUCAU-------------------------------ACCGGCG-UAGG--GA--AGCUUCGUUAGAUGCGCU-3' |
| RS003778 (Xanthomonas axonopodis pv. citri str. 306) | 5'-CCGCCGAAGUGGGGGUACCGCAGCGUG---------------------------------------------------------------------- -------------------------------------------------------------------------CUGCG-GUUGAGAU------------- ----------------------------------------------------------------------------------AGU--CCCUUCGA---AC CUGA-UCCGGCUGAU-------------------------------ACCGGCG-UAGG--GA--AGCUUCGUCAGAUGCGAU-3' |
| RS003779 (Xylella fastidiosa 9a5c) | 5'-GCUUUGAAGCGGGGGUACCAUAGCCAAG--------------------------------------------------------------------- -------------------------------------------------------------------------CUGCG-GUUGAGAC------------- ----------------------------------------------------------------------------------ACA--CCCUUCGA---AC CUGA-UCCGGUUUAC-------------------------------ACCGGCG-UAGG--AA--AGCUUCGUGGACCGCGCC-3' |
| RS003780 (Xylella fastidiosa Temecula1) | 5'-ACUUUGAAGCGGGGGUACCGUAGCCAAG--------------------------------------------------------------------- -------------------------------------------------------------------------CUGCG-GUUGAGAC------------- ----------------------------------------------------------------------------------ACA--CCCUUCGA---AC CUGA-UCCGGUUUAC-------------------------------ACCGGCG-UAGG--AA--AGCUUCGUGGACCGCGCC-3' |
| RS003781 (Leptospira interrogans serovar Lai str. 56601) | 5'-CUUGGACGUUGGGGGUGGGAUUCACUGCGU------------------------------------------------------------------- -------------------------------------------------------------------------GAAUC-UCUGAGAG------------- ----------------------------------------------------------------------------------AGU--CCCC-GGA---AC CUGA-UCAGGAUAAG-------------------------------ACCUGCG-UAGG--AA---AACGGACCUGUAAAAUU-3' |
| RS003782 (Thermotoga maritima MSB8) | 5'-ACCUUCCCCAGGGGGAGCUCCUAUU------------------------------------------------------------------------ -------------------------------------------------------------------------CCGGG-GCUGAGAGGAGGACGGA---- ----------------------------------------------------------------------------AGUCCUCGA--CCCCAAGA---AC CUGA-UCCGGGUAAU-------------------------------GCCGGCG-GAGG--GA---UCGGGGAAGGAGGAAAU-3' |
| RS003783 (Emericella nidulans) | 5'-UCUGGGCGUGGCCGGUGUUCGUUCUUAUCCUUAGCAUAUCCCUACCUCAACUGUACUGGCCUUUAUCCAGCGUUGAAGGGGACUGCCAAAGGCUCUG GG-----------------------------------------------------------------------UUCGU-UCUGAGAAU------------ ----------------------------------------------------------------------------------AUA--CGGUCAAA---AC UUGA-UCUGGAUAAU-------------------------------ACCAGCG-AAAG--GA--UCAUGCCUUCCCUUGCCU-3' |
| RS003784 (Aspergillus oryzae) | 5'-ACAUGGCAUCGAUGGACUGGGU--------------------------------------------------------------------------- --------------------------------------------------------------------------UCGU-UCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CGGCUAAA---AC UUGA-UCUGGAUAAU-------------------------------ACCAGCGAAAAG--GG--UCAUGCCUUCUCUCGUUC-3' |
| RS003785 (Aspergillus oryzae) | 5'-UGGAGGGGUACCGGGUGUACGAGGCAGAGUCCG---------------------------------------------------------------- -------------------------------------------------------------------------GUCGU-UCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CUGUCAUA---AC UUGA-UCUAGAUAAU-------------------------------ACUAGCG-AAAG--GA---CAUGCGUGGCAUUGAUU-3' |
| RS003786 (Nectria haematococca) | 5'-GUGUACAUCAA----UGUCAAGAAGAGGAGA------------------------------------------------------------------ -------------------------------------------------------------------------GCGUG-GCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--C-GGCGAA---AC UUGA-UCUGGAUAAU-------------------------------ACCAGCG-AAAG--GA---UCAUGCUCUCCUCCCCC-3' |
| RS003787 (Fusarium oxysporum) | 5'-UCAUGCAUGAGCCGGUGCCCAUUCUUCUCCCAUCAGCAUGGUCAGUUCAAACUGGUCGUGUUGAUGAUAGGGGG----------------------- -------------------------------------------------------------------------AUGUG-GCUGAGAUU------------ ----------------------------------------------------------------------------------AUA--CGGCAAA----AC UUGA-UCUGGAUAAU-------------------------------ACCAGCG-AAAG--GA---UCAUGUCAUCUCCCCUA-3' |
| RS003788 (Neurospora crassa) | 5'-AAGACAGCUACCGGGUGUCCAUGUUGGUACAGCCACAGUUGGUUCACCCUUAUCGCUCUUCCAUGCCUUCUGUGACAAGGUCUUUGGAAUGAGUUUG AUACGAUGGGCCAACUGCGGCGGUACCAC--------------------------------------------GUUGG-UCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCGGCGA----AC UUGA-UCUGGAUAAU-------------------------------ACCAGCG-AAAG--GA--UUGGCUUCUUGGGACCCC-3' |
| RS003789 (Oryza sativa) | 5'-AAGUUGCACCAGGGGUGCCUGUAUUCUCAACGAUCUGAAGGCCUCUUGGCCUGGAUUGUUGUGA--------------------------------- -------------------------------------------------------------------------AUUGG-GCUGAGAA------------- ----------------------------------------------------------------------------------AGU--CCCUUUGA---AC CUGA-ACAGGAUAAU-------------------------------GCCUGCG-AAGG--GA--GUGUGCAUUUCUACUUUU-3' |
| RS003790 (Oryza sativa (japonica cultivar-group)) | 5'-UGUUAGGAGGUGGGGUGCCUGUAUUCUCAACGAUCUGAAGGCCUCUUGGCCUGGAUUGUUGUGA--------------------------------- -------------------------------------------------------------------------AUUGG-GCUGAGAA------------- ----------------------------------------------------------------------------------AGU--CCCUUUGA---AC CUGA-ACAGGAUAAU-------------------------------GCCUGCG-AAGG--GA--GUGUGCAUUUCUACUUUU-3' |
| RS003791 (Oryza sativa (japonica cultivar-group)) | 5'-UUGAAUGACUCGGGGUGCCCCUUUUCAC--------------------------------------------------------------------- -------------------------------------------------------------------------AAAGG-GCUGAGAA------------- ----------------------------------------------------------------------------------AUA--CCCGUACC---AC CUGA-UCUGGAUAAU-------------------------------GCCAGCG-UAGG--GA---AGUCAGAUGCCUGCCCG-3' |
| RS003792 (Oryza sativa (japonica cultivar-group)) | 5'-CUAUGUUAGGAGGUGGCCUCUUGGCCUGGAUUGUUGUGA---------------------------------------------------------- -------------------------------------------------------------------------AUUGG-GCUGAGAA------------- ----------------------------------------------------------------------------------AGU--CCCUUUGA---AC CUGA-ACAGGAUAAU-------------------------------GCCUGCG-AAGG--GA--GUGUGCAUUUCUACUUUU-3' |
| RS003793 (Poa secunda) | 5'-AAGUUGCACCAGGGGUGCCUGUAUUCUCAACAAUCUGAAGGGCCCUUGGCCUGGAUUGUUGUGA--------------------------------- -------------------------------------------------------------------------UAUGG-GCUGAGAA------------- ----------------------------------------------------------------------------------AGU--CCCUUUGA---AC CUGA-ACAGGAUAAU-------------------------------GCCUGCG-UAGG--GA--GUGUGCAUUUCUAUUUUG-3' |
| RS003794 (Arabidopsis thaliana (thale cress)) | 5'-CAAAAGCACCAGGGGUGCUUGAACCAGGAUAGCCUGCGAAAAGGCGGGCUAUCCGGG---------------------------------------- -------------------------------------------------------------------------ACCAG-GCUGAGAA------------- ----------------------------------------------------------------------------------AGU--CCCUUUGA---AC CUGA-ACAGGGUAAU-------------------------------GCCUGCG-CAGG--GA--GUGUGCAGUUUUUUUUUU-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

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