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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-<<<<<............................................................................................

...>>>>>-3'

 
RS003581 (Cryptosporidium parvum)

5'-CUAUU-UAUGAUGAUUU-CCC----UUAAUUU-UACCAUCUUUCGGGUCUGAAUUAA-------------GAUGUGUUGAUAUUAUGGGAUAUACUG

A--AAUAG-3'

RS003582 (Mus musculus (house mouse))

5'--AUCCUAGUGAUGACAAGACGAC-AUUGUCAA-C-CAAUCCCCCACAAGGGAAUGAG-------------GACAUG-------UCCUGCA-AUUCUG

AAUGG----3'

RS003583 (Mus musculus (house mouse))

5'-GAUCCUAGUGAUGACAAGACGAC-AUUGUCAA-C-CAAUCCCCCACAAGGGAAUGAG-------------GACAUG-------UCCUGCA-AUUCUG

AAUGGGUU-3'

RS003584 (Sus scrofa (pig))

5'-GAUCCUGGUGAUGACCA-AUGAC-AUUGUCAG-C-CAAUCC-CCACAUGGGAAUGUG-------------GACAUG-------UCCUGCA-AUUCUG

AAGGGAUU-3'

RS003585 (Oryza sativa (japonica cultivar-group))

5'-UGGCC-GGUGAAGAAAA-CCUCG-AUUAAAAA-CACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCG-GCCAUGCUGCCA-UUCUGCA-AUUCUG

A--GGCCA-3'

RS003586 (Oryza sativa (japonica cultivar-group))

5'-GGACC-UGUGAUGAAAU-CUGGA-ACCAAAAA-UACCAUCUUUCGGGACUGAUUUGGCUU---UCAGCA-GCCAUGUUGUCACUUCCAAG-AUCCUG

A--GGUCU-3'

RS003587 (Oryza sativa (japonica cultivar-group))

5'-CGACG--GUGAUGAAAAACCGCA-AGAAAAACACACCAUCUUUCGGGGCUGAUUUGGCGCCGCCGCGCGUGCAAUGAUGCUAAUUCUGCA-AUUCUG

A--UGUCC-3'

RS003588 (Arabidopsis thaliana (thale cress))

5'-UAGCC-AAUGAGGACAU-CAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUAA---------------CAUUGAUGAUACUUCUGCA-AUUCUG

A--GGCUA-3'

RS003589 (Arabidopsis thaliana (thale cress))

5'--AGCC-GAUGUGGAUAU-CAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUGACUUCU--UUUGAA-GUUUUGCUGAUACUUCUGCA-AUUCUG

A--GGCU--3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.