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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-.....<<<<<.<<<.......<<<<........................................................................

.>>>>..<<<<<..<<<......<<...........................................................................

...................>>....>>>>>.>>>.............................................>>>>>>>>.....-3'

 
RS013004 (Mycobacterium avium subsp. paratuberculosis K-10)

5'------UGCCU-CUG-GAAAGCGGUGCCGG-------------CCCUCGGGCC--------------------------------------------C

GCACC-CGCCGAUGGGGA--AA-GGCGG-------------------------------CCGC-------------------------------------

-----GACAGCAUCGGCCGCCGAAUCUCUCAGGC---------------------GCCCGGCGAACGGGU--GAA-GA-CAGAGGAAGAGGA-3'

RS013005 (Mycobacterium avium subsp. paratuberculosis K-10)

5'-CGCAUUCGAG-CGG-GAGAGUUCCGUGACGGCCA--------GUCA---------------------------------------------------

-CGGA-CGCCGAAGGAGC--AACACCUC-------------------------------UCC--------------------------------------

-------------------GUCAACCUCUCAGGC------------------------------------ACCCG-GA-CCGCGCGAAACAU-3'

RS013006 (Mycobacterium tuberculosis H37Rv)

5'------UGCCU-CUG-GAAAGCGGUGGC---------------GACCCCUGGCGGUC----------------------------------------C

UCACC-CGCCGAUGGGGA--AA-GGCGAUU-----------------------------CACC-------------------------------------

-UGACGGUGGACAGAGUCGCCGAAUCUCUCAGGC---------------------GCCUGGCGUGCAGGU--GAA-GA-CAGAGGGAGAGGG-3'

RS013007 (Mycobacterium tuberculosis CDC1551)

5'------CAACU-CUG-GAGACAGGGACG---------------GUCGCACCGACC------------------------------------------G

UGCCU-GACCGAAGGUGU--AGAGCGGC-------------------------------GCCA-------------------------------------

-------UGAUGCGACGCCGC-AGACUCUCAGGU------------------------------------UUCAG-GA-CAGAGCGGGGAGG-3'

RS013008 (Mycobacterium tuberculosis H37Rv)

5'-CGCUCUAGUG-CGG-GAGAGUUCUGUGGCUG-----------CCAGC-------------------------------------------------U

ACGGA-CGCCGAAGGAGC--AAUACCUC-------------------------------UCC--------------------------------------

-------------------GUCAACCUCUCAGGC------------------------------------ACCCG-GA-CCGCGCGAGACUA-3'

RS013009 (Mycobacterium tuberculosis CDC1551)

5'-UGACGCGAUG-UGG-GAGAA-CCUCC----------------AUGUC--------------------------------------------------

-GAGG-CGCCGUAGGAGC--AA-UCUCCU------------------------------CCCC-------------------------------------

-------------------GAGAAUCUCUCAGGC------------------------------------CCAAG-CA-CCACACCGCCGAG-3'

RS013010 (Rhodococcus fascians)

5'-UUCGACAACU-CUG-GAAAGUGGUGGGA--------------GCACC--------------------------------------------------

-CACC-CGCCCAAGGGGA--AA-GGUGCCGGU---------------------------GCGC---------------------------------GCAU

GUCAGCGCGCCGUGUUCUACCGAAUCUCUCAGGC---------------------GCACGCGUCAGCGAGCACAC-GA-CAGAGGGGGAGGA-3'

RS013011 (Rhodococcus fascians)

5'-CGCCUGCGCG---G-GAGAGUUCCGAGGC-------------AUCCAGU-----------------------------------------------C

UCGGA-CGCCGAAGGAGC--AAUACCUC-------------------------------CCC--------------------------------------

-------------------GUCAAUCUCUCAGGC------------------------------------ACACG-GA-C---GCGUGUGGG-3'

RS013012 (Leifsonia xyli subsp. xyli str. CTCB07)

5'-GAGGCCGAUG-CGG-GAGAGCUGCGGG---------------GGAGAACCCG--------------------------------------------C

CCGCGGCACCGAAGGAGC--AA-UCCUC-------------------------------CCC--------------------------------------

-------------------GACAAUCUCUCAGGU------------------------------------ACGCG-UA-CCGCAUCGGACUG-3'

RS013013 (Leifsonia xyli subsp. xyli str. CTCB07)

5'------CCACU-CUG-AAAAGCAGG------------------GCAGCGUCGACCCUCCGGGUCGAUCCCGCGGGACAUGCU---------------G

G-CCU-CGCCCACGGUGA--AA-GCCGC-------------------------------GAAC-------------------------------------

-----------GCUUCGCGGUGAAACUCUCAGGC------------------------------------CGGAU-GA-CAGAGGGGGAGUU-3'

RS013014 (Streptomyces coelicolor)

5'------UCACU-CUG-GAAAGCAGGGCGGGU------------GUCGACGGCUUC------------------------------------------C

GCUCU-CACCGACGGUGA--AA-GCCGGGCAGAGC------------------------UCCA-------------------------------------

--------GGGCUCGCCCGGUGAAGCUCUCAGGU-----------------------------------UGAGAU-GA-CAGAGGGGGAGGC-3'

RS013015 (Streptomyces coelicolor)

5'-UGAAUCCGCG-CGG-GAGAGUCCCCGG----------------CCGCG------------------------------------------------C

CGGGG-CGCCGAAGGAGC--AA-GUCCC-------------------------------UCCC-------------------------------------

-------------------UUGAAUCUCUCAGGC------------------------------------ACCGU-UA-CCGCGCGGGCGAG-3'

RS013016 (Streptomyces coelicolor)

5'------CACAU-CUG-AAAAGCGGACCGCC-------------CCCGACGG----------------------------------------------C

GGUCC-CACCCAAGGUGC--AA-GCCCUGA-----------------------------UCGC-------------------------------------

-CGUACUCCGGUGGCCGUGGCGAACCUCUCAGGU-----------------------------------UCCGAU-GA-CAGAUGGGGAGGA-3'

RS013017 (Streptomyces coelicolor)

5'-UGACCCCGCG-CGG-GAGAGUCCUCCGGAC------------AUCAC-------------------------------------------------C

GGAGG-CGCCGAAGGAGC--AA-AUCCU-------------------------------CCCC-------------------------------------

-------------------GG-AAUCUCUCAGGC------------------------------------UCACG-UA-CCGCACGGACGAG-3'

RS013018 (Bacillus subtilis)

5'-AUGACAGCAA-GGG-GAGAGACCUGACC--------------GAAAACCUCGGGA-----------------------------------------U

ACAGG-CGCCGAAGGAGC--AA-ACU---------------------------------GCGG-------------------------------------

------------------AGUGAAUCUCUCAGGC------------------------------------AAAAG-AA-CUCUUGCUCGACG-3'

RS013019 (Bacillus phage phBC6A52)

5'-AUGAACCAUU-CAG-GAGAA-GGUC-----------------UAUU---------------------------------------------------

-GAUC-UACCGACGGGGC--AA-AAAGUUGUUA--------------------------UACC-------------------------------------

---------------AGCUUUGAAACUCUCAGGU-----------------------------CUUGGUUACAAG-UA---GAACUGCAUGG-3'

RS013020 (Bacillus thuringiensis serovar konkukian str. 97-27)

5'-GGACGAAUCU-CUG-GAGAGACUCCCUCUCGCU---------UUAAAUAGCGUAGAGGAA------------------------------------A

ACGAG-CACCGAAGGAGC--AAAUCCGC-------------------------------UACU-------------------------------------

-------------AUAGCGGAUAAUCUCUCAGGU------------------------------------AAAAG-GA-CAGAGACAAGCGA-3'

RS013021 (Bacillus thuringiensis serovar konkukian str. 97-27)

5'-AUGAACCAUU-CAG-GAGAA-GGUC-----------------UAUU---------------------------------------------------

-GAUC-UACCGACGGGGC--AA-AAAGUUGUUAACC-----------------------GACU-------------------------------------

-------------------UUGAAACUCUCAGGU-----------------------------CUUGUUUACAAG-UA---GAACUGCAUGG-3'

RS013022 (Bacillus cereus ATCC 10987)

5'-GGACGAAUCU-CUG-GAGAGACUCCCUCUCGCU---------UUAUAUAGCGUAGAGGAA------------------------------------A

ACGAG-CACCGAAGGAGC--AAAUCCGC-------------------------------UACU-------------------------------------

-------------AUAGCGGAUAAUCUCUCAGGU------------------------------------AAAAG-GA-CAGAGACAAGCGA-3'

RS013023 (Listeria innocua)

5'-GUGAAUGUAA-ACA-GAGAGACUG------------------UGAAA-------------------------------------------------A

G-CAG-CGCCGACGGGGA--AA-GCAUAAG-----------------------------UUAU-------------------------------------

-------------------GUGAAACUCUCAGGC------------------------------------AAAAG-GA-UGUUUACGGGACG-3'

RS013024 (Listeria monocytogenes)

5'-GUGAAUGUAA-GCA-GAGAGACUGC-----------------GAAAA--------------------------------------------------

-GCAG-CGCCGACGGGGA--AA-GCAUA-------------------------------UAUU-------------------------------------

-----------------AUGUGAAACUCUCAGGC------------------------------------AAAAG-GA-UGUUUACGGGACG-3'

RS013025 (Listeria monocytogenes str. 4b F2365)

5'-GUGAAUGUAA-GCA-GAGAGACUGC-----------------GAAAA--------------------------------------------------

-GCGG-CGCCGACGGGGA--AA-GCAUG-------------------------------UAUU-------------------------------------

-----------------AUGUGAAACUCUCAGGC------------------------------------AAAAG-GA-UGUUUACGGGACG-3'

RS013026 (Staphylococcus epidermidis ATCC 12228)

5'-UUGAUCAGUA-UUA-GAGAGAAUAGAGA--------------UCAAAACUUGAAUCAUUAUAAGUUAAACGUUUUUAGUCUAUUACAAUUUUGACUC

UCUAU-CGCCGAAGGUGC--AA-GUG--------------------------------------------------------------------------

--------------AAAUAACGAAACUCUCAGGC------------------------------------AAAAG-GA-UAAUACUGUAACG-3'

RS013027 (Clostridium tetani E88)

5'------AAACU-CUG-GAGAGACUCUUUU--------------UUAUA-------------------------------------------------A

AAGAG-CACCGAAGGAGC--AA-GUUGGGUAAA--------------------------ACCA-------------------------------------

-------------------AUGAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGCGUAGAAG-3'

RS013028 (Clostridium acetobutylicum ATCC 824)

5'------AACCC-UUG-GAGAGACUC------------------UUAAA--------------------------------------------------

--GAG-CACCGAAGGAGA--AA-GCAUAAA-----------------------------AAAA-------------------------------------

-------------------GCGAAACUCUCAGGU------------------------------------AAAAG-GA-CAGGGGACAGAUA-3'

RS013029 (Clostridium tetani E88)

5'-UUGAAGAGUA-UAA-GAGAGAUCCUAU---------------UUUAA--------------------------------------------------

-AGGA-CGCCGAAGGGAC--AA-UCUAUGUUUA--------------------------UCCC-------------------------------------

--------AAUAAAACAUAGAGAAAUUCUCAGGC------------------------------------AAAAG-AA-UUAUACUUUGAUA-3'

RS013030 (Clostridium sticklandii)

5'-AUGAAGAGCA-AAA-GAGAGAAUC------------------GUUU---------------------------------------------------

--GAU-CGCCGAAGGGAC--AA-GUUUAUAUUU--------------------------GCCA-------------------------------------

------------AAUAUAAAUGAAAUUCUCAGGC------------------------------------AAAAG-GA-UUUUGCUUGGACA-3'

RS013031 (Clostridium tetani E88)

5'-AUGAAGGUAA-UAG-GAGAGAGGUC-----------------UUUU---------------------------------------------------

-GACC-CACCGAAGAUGC--AAA-----------------------------------------------------------------------------

----------------------AAUCUUUCAGGU---------------------ACCAUUGUUUAUGGC--GAG-GA-CUGUUAUUGGACG-3'

RS013032 (Clostridium acetobutylicum ATCC 824)

5'-AUGAAGUUAG-CGG-GAGAGCUUUGGCU--------------UUUGC--------------------------------------------------

-CAUA-CACCGAAGAAGU--AA------------------------------------------------------------------------------

-----------------------AUCUUUCAGGU-----------------------AUCUAUUUAAUUAGAGAU-GA-CCGCUAUUGGAUG-3'

RS013033 (Eubacterium acidaminophilum)

5'-AUGAAGGUGG-CAG-GAGAGACCC-------------------AUGA--------------------------------------------------

G-GGG-CGCCGAAGAAGU--AA------------------------------------------------------------------------------

-----------------------AGCUUUCAGGC-----------------------------------U--UAG-GA-CUGUCAUCA-----3'

RS013034 (Eubacterium acidaminophilum)

5'-AGACGAUACU-CUG-GAGAGACCA------------------UAUA---------------------------------------------------

--AGG-CACCGAAGGAGC--AA-AUUUAAUUGAGAUCUUUAUAUAAAUAAAAAAGCUCAUCCC-----------------------------------UU

UUUUAGAUCAAGCGAUUAAAUGAAUCUCUCAGGU------------------------------------AAAAG-GA-CAGAGAACUGAAU-3'

RS013035 (Thermoanaerobacter tengcongensis MB4)

5'------GGCCU-CUG-GAAAGUCUC------------------GUAAA--------------------------------------------------

--GAG-CACCGAAGGAGC--AA-UACAUAUGGAAG------------------------GCCA-------------------------------------

---------------UAUGUAGAAGCUCUCAGGU------------------------------------AGAAA-AA-CAGAGGAGUUGUG-3'

RS013036 (Thermoanaerobacter tengcongensis MB4)

5'-AUGAAGAUAG-CGA-GAGAUUAUCUUCC--------------AUAAAUG-----------------------------------------------G

AAGAU-AGCCGAAGGGGA--AA-UACAAAG-----------------------------GCCC-------------------------------------

-------GCCAAGCCUUUGUAGAAGCUCUCAGGC------------------------------------GGCAG-GA-UCGCUAUCGGAUA-3'

RS013037 (Thermoanaerobacter tengcongensis MB4)

5'------AUAUC-CCG-GAAAG-CCUC-----------------UAAA---------------------------------------------------

-GAGG-CACCGAAGGAGC--AA-UUCUUCUAU---------------------------AAAG-------------------------------------

-------------------AAGAAUCUCUCAGGU------------------------------------AAACA-GA-CGGGGGAAUAAAA-3'

RS013038 (Thermoanaerobacter tengcongensis MB4)

5'-AUGAAGAAUG-CGG-GAGAGACCC------------------UAACC--------------------------------------------------

--GGG-CGCCGAAGGAGC--AA-GCGGGUAUAUGGCCUGUAU-----------------ACUC-------------------------------------

-------------------GUGAAACUCUCAGGC------------------------------------AAAAG-GA-CCGCAUUCGGACC-3'

RS013039 (Streptococcus.Viruses.Viruses.Viruses.Viruses)

5'-UGAUGUCAUG-CAG-GAGAA-GAA------------------UUUU---------------------------------------------------

--UUU-CGCCGAAGGAGU--UA------------------------------------------------------------------------------

-----------------------UACUCUCAGGU------------------------GUUCAGUUUUUGAACGG-GA-CUGUUUGAUGGAC-3'

RS013040 (Streptococcus mutans UA159)

5'-UGACGGACUU-CUG-GAGAGACC-------------------UACUA--------------------------------------------------

---GG-CGCCGAAGGGGC--AA-GGCUG-------------------------------UUUG-------------------------------------

-------------------CUCAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAAAAGAAAAA-3'

RS013041 (Streptococcus pneumoniae R6)

5'-GGACGGAACU-CUG-GAGAGACC-------------------GUAAA--------------------------------------------------

---GG-CACCGAAGGGGC--AA-GGCAG-------------------------------GCAA-------------------------------------

----------------CUGCUCAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGCUAGGAUA-3'

RS013042 (Streptococcus.Viruses.Viruses.Viruses.Viruses)

5'------GACUU-CUG-GAGAGACCU------------------UAUU---------------------------------------------------

--AGG-CGCCGAAGGGGC--AA-GGCAU-------------------------------ACUG-------------------------------------

-------------------CUCAAUCUCUCAGGC------------------------------------AAAAG-GA-CAGAAGGUAAAAU-3'

RS013043 (Streptococcus pyogenes MGAS8232)

5'-UGAUGUCAUG-CAG-GAGA--AGAA-----------------UUUA---------------------------------------------------

-UUUU-CGCCGAAGGAGU--UA------------------------------------------------------------------------------

-----------------------UACUCUCAGGU------------------------GUUCAGUUUUUGAACGG-GA-CUGUUUGAUGGAC-3'

RS013044 (Streptococcus agalactiae NEM316)

5'-AGACGGACUU-CUG-GAGAGACCUA-----------------UAAGUAGCAACAUCUUUGUAUUGACACCAAGAUGUGC-----------------U

CUAGG-CGCCGAAGGGGC--AA-GAAGAGUAAAACAA----------------------CUCC-------------------------------------

-------------------UCCAAUCUCUCAGGC------------------------------------AAAAG-GA-CAGAAGCUAAAAG-3'

RS013045 (Streptococcus agalactiae NEM316)

5'-UGACGUCAUU-CAG-GAGAAGAAAG-----------------UUAGA--------------------------------------------------

-CUUU-CGCCGAAGGAAU--UA------------------------------------------------------------------------------

-----------------------CACUCUCAGGU-----------------------------GUCUUAAGACAG-GA-CUGAUUGAC-----3'

RS013046 (Caulobacter crescentus CB15)

5'------GAACG-CUG-GAAAGCAGAGCG---------------CGCGC-------------------------------------------------C

GCUCU-CGCCGAAGGAGC--AA-GGCCU-------------------------------GCCG-------------------------------------

---ACUGUCUGGUCGGCCGCUGAAUCUCUCAGGC-----------------------------------GCCAAG-GA-CAGCGGGGGCAGA-3'

RS013047 (Caulobacter crescentus CB15)

5'-UCGACCCUCG-CGG-GAGACAUCGGGA---------------UUCGA-------------------------------------------------U

CCCGA-GGCCGAAGGCGC--AA-CCG---------------------------------CCCC-------------------------------------

-------------------GG-AAACGCUCAGGC------------------------------------AAAAG-GA-CCGCGCGGG-----3'

RS013048 (Caulobacter crescentus CB15)

5'-AGGCCUCUCG-CGG-GAGAGAUCGGGC---------------CUUGC--------------------------------------------------

-CCGG-CGCUGAAGGCGA--AA-CCG---------------------------------CCCC-------------------------------------

-------------------GG-AAACGCUCAAGC------------------------------------AGAAG-GA-CCGCGCGAGACGU-3'

RS013049 (Caulobacter crescentus CB15)

5'-UUUAGGAACG-CUG-GAAAGCAGUCUC---------------UCCACCGGA---------------------------------------------G

GGGCU-CGCCGAAGGAGC--AA-GGCCAA------------------------------ACCC------------------------------------G

UCCGGCAGAGGGGCGAGGCCGGAAUCUCUCAGGC-----------------------------------CCAAGG-GA-CAGCGGGGGCGAC-3'

RS013050 (Bartonella henselae)

5'------UUUUG-CGG-GAGAGUGCAGGC---------------UGCAAGUUUUUGG-----------------------------------------G

UCUGC-CGCCGAAGGGGA--AA-AUA---------------------------------GCCC-------------------------------------

-------------------GU-AAUCUCUCAGGC---------------------------------UCU--AAG-GA-CCGUAAAAGAAGA-3'

RS013051 (Bartonella henselae)

5'------CAGAU-CUG-GAAAGUCGG------------------GAGG--------------------------------------------------G

G-CCG-CGCCGAAGGUGU--AA-GCGAA-------------------------------AACU-------------------------------------

-------------UUUUUCGCGAGUCUCUCAGGU-----------------------------------U--UGU-AA-CAGAGGGGUGCAG-3'

RS013052 (Rhodopseudomonas palustris CGA009)

5'-CGACUGACAU-CUG-GAAAGAGACCCUGCCGGGC--------GAUCCCGGGA--------------------------------------------C

GGGUC-CGCCGACGGGAU--AA------------------------------------------------------------------------------

-----------------------UGCUCUCAGGC------------------------------------ACAGC-GA-CAGAUGGGGCUCG-3'

RS013053 (Rhodopseudomonas palustris CGA009)

5'-CUAAGUCGCGUCGG-GAGAGAUCGGCC---------------GCAA--------------------------------------------------G

GCCGG-CGCCGAAGGAGC--AA-CCG---------------------------------CCCC-------------------------------------

-------------------GG-AAACUCUCAGGC------------------------------------AAACG-GA-CCGCGCGGC-----3'

RS013054 (Brucella melitensis 16M)

5'-UAAGACAACU-CUG-GAAAGUCGGGGG----------------CAAC--------------------------------------------------

-UCCG-CGCCGAAGGUGU--AA-GUAUGGCUUUAUAUAUA-------------------GCCA-------------------------------------

------------------UGCGAGUCUCUCAGGC-----------------------------------C--UGA-GA-CAGAGGGGCACGA-3'

RS013055 (Agrobacterium tumefaciens str. C58)

5'-CGCAUCAUCG-UUGGGAGAAACCGC-----------------UUCA--------------------------------------------------U

UGCGG-UGCCGAAGGAGC--AA-CCG---------------------------------CCCC-------------------------------------

-------------------GG-AAACUCUCAGGC------------------------------------AAAAG-GACCAGCGAUGA-----3'

RS013056 (Agrobacterium tumefaciens str. C58)

5'-CGACGGAACU-CUG-GAGAGAAGCCAC---------------CUUGACUAAAGG------------------------------------------A

CGGCU-CGCCGAAGGGAU--AA------------------------------------------------------------------------------

-----------------------CAAUCUCAGGC-----------------------------------GACAAG-GA-CAGAGGGGGCUCU-3'

RS013057 (Sinorhizobium meliloti)

5'-CGACCUCGUU--GG-GAGAAACCGG-----------------UUCGA--------------------------------------------------

UCCGG-UGCCGAAGGAGC--AA-CCG---------------------------------CCCC-------------------------------------

-------------------GG-AAACUCUCAGGC------------------------------------CAAAG-GA-CC-AGCAAGGUGC-3'

RS013058 (Bordetella parapertussis)

5'-AAACAGCACU-CUG-GAGAGACCUGGCGUGGCCACC------UUCGCGGUGCGCAAGCAG------------------------------------C

CCAGG-CGCCGAAGGUGC--AAACCCGC-------------------------------UCGC-------------------------------------

----------------GCGGGGCAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGGAA-3'

RS013059 (Bordetella bronchiseptica)

5'------AACAU-CUG-GAGAGUGGCGCGCG-------------GUAC--------------------------------------------------G

GCGCC-CACCGAAGGGGA--U--CCCUG-------------------------------GCGC-------------------------------------

-GUUUGCAGCGGCGCACGGGUGAAGCUCUCAGGU------------------------------------AAAUG-GA-CAGAUGGGGUUGC-3'

RS013060 (Bordetella bronchiseptica)

5'-AAACAGCACU-CUG-GAGAGACCUGGCGCGGCCACC------UUCGCGGUGCGCAAGCAG------------------------------------C

CCAGG-CGCCGAAGGUGC--AAACCCGC-------------------------------UCGC-------------------------------------

----------------GCGGGGCAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGGAA-3'

RS013061 (Bordetella bronchiseptica)

5'-ACGCAUGUCG-CGG-GAGAGAGCGGCCG--------------AUUGC-------------------------------------------------G

GCUGC-CGCCGAAGGCGC--AA-UUC---------------------------------GCCC-------------------------------------

-------------------GG-AAUCGCUCAGGU-----------------------------------AACCCA-UA-CCGCGACUGCAUC-3'

RS013062 (Bordetella bronchiseptica)

5'-ACGUGCAGUU-CGG-GAGAGACCGU-----------------CCAGC-------------------------------------------------G

GACGG-CGCCGACGGAGC--AA-CCA---------------------------------CCCC-------------------------------------

-------------------GG-AAACUCUCAGGC------------------------------------AAAAG-GA-CCGACCUGC-----3'

RS013063 (Ralstonia solanacearum)

5'-GCCAUCCAUC-CGG-GAGAGCGCGUCGGCC------------GCAUACGGCC--------------------------------------------A

GUCGC-CGCCGAAGGGGU--AG-C-----------------------------------ACCC-------------------------------------

--------------------GAAAACUCUCAGGC---------------------------------AUC--CAG-GA-CCGGGUGGAUCGG-3'

RS013064 (Ralstonia solanacearum)

5'-CGGCCGCACU-CUG-GAGAGCGGCGCCGC-------------GUCACCAUCGCG------------------------------------------G

GCGCC-CACCGAAGGGGCUCAC-GGAACCG-----------------------------UCGC-------------------------------------

---ACGCGUUGUGUCGCUUCCCAAUCUCUCAGGU-----------------------------------ACCAAG-GA-CAGAGGGGCCACC-3'

RS013065 (Chromobacterium violaceum ATCC 12472)

5'-UCCGGUUCUG-CGG-GAGAGAGGGGCC----------------ACG---------------------------------------------------

-CCCC-CGCCGAAGACGC--AA-GC----------------------------------UCCC-------------------------------------

-------------------AU-AAUCGCUCAGGC------------------------------------AACCG-UA-CCGCAGCGCCGUA-3'

RS013066 (Chromobacterium violaceum ATCC 12472)

5'-UUCGCGCAAU-CUG-GAGAGCGGCG-----------------UCCGCGC-----------------------------------------------G

ACGCC-CACCGAAGGGGC--UAACGGCUUA-----------------------------UCCG-------------------------------------

-----------------GCCGGAAAAUCUCAGGU------------------------------------GCAGG-GA-CAGAGGGGUGUGG-3'

RS013067 (Chromobacterium violaceum ATCC 12472)

5'-AUCAAGCCGA-UUG-GAGAGAGGCCGC---------------CCCGC-------------------------------------------------G

CGGCC-CACCGAAGGGGC--AA-GUGGCCUAAG--------------------------GCC--------------------------------------

-------------------GCGCAACUCUCAGGU-----------------------------------AAAAAG-GA-CAAGGGGAGAGGC-3'

RS013068 (Chromobacterium violaceum ATCC 12472)

5'-CCGGGUCAUA-CAG-GAGAGAGCGGCU---------------UUCU--------------------------------------------------G

GCCGC-CGCCGAAGGCGC--AA-GCGCA-------------------------------CCC--------------------------------------

-------------------GC-AAUCGCUCAGGC------------------------------------AAAAG-GA-CUGUAUCAUCGGG-3'

RS013069 (Neisseria meningitidis Z2491)

5'-GGGAAAUGUG-CAG-GAGAGUGUUACACCCAAC---------UACAA-------------------------------------------------U

GUAAC-CACCGAAGGCGC--A--GAC---------------------------------ACCC-------------------------------------

-------------------UUAAAUCGCUCAGGU---------------------------------AUC--AGG-GA-CUGCACAUUGAAA-3'

RS013070 (Neisseria meningitidis Z2491)

5'------ACAAU-CUG-GAGAGCGGCGUUGG-------------AAUAA--------------------------------------------------

-CGUC-CACCGAAGGGGA--GAAGGCCGUCUGAAC------------------------CACCAUUCAGACAACCGCGCAAAGCAGUGAGCAGACUGGUU

UGCCAUCAUGCGGAUACGGCCGAAAAUCUCAGGU------------------------------------UCAAG-GA-CAGAUAGGGUCAU-3'

RS013071 (Nitrosomonas europaea ATCC 19718)

5'------GCAAU-CUG-GAGAGUGCUG-----------------AAACAGC-----------------------------------------------U

UCAGC-CACCGAAGGGGC--AU-GCGGAAAGUU--------------------------GACC-------------------------------------

-------------------GUAAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGGGGUAAGU-3'

RS013072 (Nitrosomonas europaea ATCC 19718)

5'-UUCAUCCAGG-CAG-GAGAGUGCGCUG---------------UAUCAAAAUA--------------------------------------------C

AGUGU-CACCGAAGGCGU--AA-CC----------------------------------CCCC-------------------------------------

-------------------GG-AAUCGCUCAGGU--------------------GUGGCCAUAAGGCUUG--AGU-AA-CUGCUUGUGAUUG-3'

RS013073 (Desulfotalea psychrophila LSv54)

5'-AUGAACAUAG-CAG-GAGAGAUUUU-----------------UCCCAUGGCAGUACGGAUGG----------------------------------G

GAAGG-CACCGAAGAAGU--AA------------------------------------------------------------------------------

-----------------------AUCUUUCAGGU------------------------------------CAAAG-GA-CUGCUAUGGGACG-3'

RS013074 (Desulfotalea psychrophila LSv54)

5'------AGCCU-CUG-GAGAGUCUC------------------AUUAU--------------------------------------------------

--GGG-CACCGAAGGAGC--AA-GCCAGCGUGUA-------------------------GCUG-------------------------------------

-------------------GUGAACCUCUCAGGU------------------------------------ACAAGGGA-CAGAGUGUAGCAG-3'

RS013075 (Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)

5'------AGCCU-CUG-GAGAGACCCC-----------------GCAA---------------------------------------------------

-GGGG-CACCGAAGGAGC--AA-GCCGC-------------------------------CCCA-------------------------------------

------------UGUGGCGGUGAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGGGAGGGCC-3'

RS013076 (Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough)

5'-AUGACGACAG-CAG-GAGAGACCUCCC---------------CCAGA-------------------------------------------------G

GGAGG-CGCCGACGAAGU--AA------------------------------------------------------------------------------

-----------------------AUCUUUCAGGC------------------------------------GAAAG-GA-CUGCUGUCCGACG-3'

RS013077 (Shewanella oneidensis MR-1)

5'-AUGAAGGUAG-CAG-GAGAGUGGGGA----------------AUUAA--------------------------------------------------

-CCCCACACCGACGAGGC--AA-CUUUGUUGUUGGAAGCAU------------------UCCA-------------------------------------

------------UAAACAAAGCACUCUUUCAGGU--------------------------GCCGCAAGGC--GUG-GA-CUGUUACUGGACG-3'

RS013078 (Shewanella oneidensis MR-1)

5'------AGCCU-CUG-GAGAGACUACCGAUUGCA---------UUAACUUGCAAUAAU---------------------------------------A

GGUGG-CGCCGAAGGCGA--AA-GUG---------------------------------UCGC-------------------------------------

---UGUGUUGUUAAGCGACGCGAAACGCUCAGGC------------------------------------AAAAG-GA-CAGAGGAGAGGAU-3'

RS013079 (Erwinia carotovora subsp. atroseptica SCRI1043)

5'-UUGAAGCCAA-CUG-GAGAGAGGUUGC---------------GAUGC--------------------------------------------------

-AACC-CACCGAAGGGGC--AA-GCAGC-------------------------------UCUG-------------------------------------

---------------CUGCGU-AAACUCUCAGGU-----------------------------------AAAGCG-GA-CAGAGGGAGUGGC-3'

RS013080 (Erwinia carotovora subsp. atroseptica SCRI1043)

5'-CCGCUCCUCG-CAG-GAGAGAGGGCGUGUACUCCAGCAUAC-UUCAAGCUACAUGUACGUUGGCAUAAAGUAUA----------------------A

CGCUC-CGCCGAAGGCGC--AA-AC----------------------------------UCCC-------------------------------------

-------------------AU-AAUCGCUCAGGC-----------------------------------UACCCU-AA-CUGCGAAUU-----3'

RS013081 (Haemophilus influenzae Rd KW20)

5'-AUGAAGGUAG-CUG-GAGAGCGGGAA----------------AUUGA--------------------------------------------------

-CCCCACACCGACGAUGU--AA------------------------------------------------------------------------------

----------------------AAUCUUUCAGGU------------------------------------GCGAU-GG-CAGGGACUGUUAC-3'

RS013082 (Haemophilus influenzae Rd KW20)

5'-GGACGAACCC-UUG-GAGAGAUCCAUU---------------UUAGA-------------------------------------------------A

AUGGA-CGCCGAA-GCGC--AA-AAGAGCGGUUAAUUUU--------------------UCAA-------------------------------------

-------------UCGUUUUUCAAACGCUCAGGC------------------------------------AAAAG-GA-CAGGGGCAAAAGA-3'

RS013083 (Haemophilus ducreyi 35000HP)

5'------AACCC-UUG-GAGAGAUCCACUCUGUACUAUAGUACAGAAAA--------------------------------------------------

-UGGA-CGCCGAAGGCGC--AA-AUAUA-------------------------------AAGC-------------------------------------

-----------AAAUUUAUGUGAAACGCUCAGGC------------------------------------AAAAG-GA-CAGGGGAGAAAAG-3'

RS013084 (Pasteurella multocida subsp. multocida str. Pm70)

5'------AACCC-UUG-GAGAGAGCCG-----------------UUAUAUUAAAAAGAGAUAA-----------------------------------A

ACGGC-CGCCGAAGGCGC--AA-AAAGA-------------------------------GCGG-------------------------------------

---UUAAUUUUUCCGUUUUUUCAAACGCUCAGGC------------------------------------AAAAG-GA-CAGGGGCAACAAG-3'

RS013085 (Pasteurella multocida subsp. multocida str. Pm70)

5'-AUGAAGGUAG-CUG-GAGAGUAGGGA----------------AUUGA--------------------------------------------------

-CCCUACGCCGACGAGGU--AA------------------------------------------------------------------------------

----------------------ACUCUUUCAGGC-----------------------GCUGAUUAUAAGC--AGG-GA-CUGUUACUGGACG-3'

RS013086 (Acinetobacter sp. ADP1)

5'-AUGAUUAUUG-CAG-GAGAGAUAUUCU---------------UGCAA-------------------------------------------------A

GGAUA-CGCCGAAGGAGC--AA-CG----------------------------------ACCC-------------------------------------

-------------------CGGAAACUCUCAGGC------------------------------------AGAAG-GA-CUGUAAUAAUCGA-3'

RS013087 (Acinetobacter sp. ADP1)

5'------AUAAU-CUG-GAGAGAAGUAUU---------------UCAAA-------------------------------------------------A

AUACU-CACCGAAGGGGA--UG-GUACG-------------------------------UAGA------------------------------------U

UUAUGGAAAUCUAUAGCUACCGAAGCUCUCAGGU------------------------------------ACCCU-GA-CAGAUGGGGCAAC-3'

RS013088 (Photobacterium profundum)

5'------AGCCU-CUG-GAGAGACCCG-----------------UUAAA--------------------------------------------------

UCGGG-CGCCGAAGGAGC--AA-GCUUU-------------------------------CCUU-------------------------------UUUGCU

GUUUUAACAUGCAUGGAAAGUGAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGAGAUAAG-3'

RS013089 (Photobacterium profundum)

5'-AUGAAGAUAG-CAG-GAGAGUGGCA-----------------UAUUAUUCGCUAGCAGAAUCAUUCUGAUACGAGUA-------------------U

AAGCC-CGCCGAAGAAGU--AA-GCGUUCUUA---------------------------AACC-------------------------------GUUUGU

UACUGUUCAAACACAAGACGUUAAUCUUUCAGGC--ACUGGAUUACAUACCUUUUAACAAGGUAUCCGGU--AUG-GA-CUGUUAUUGGAGG-3'

RS013090 (Vibrio cholerae O1 biovar eltor str. N16961)

5'------AACCU-CUG-GAGAGAACCG-----------------UUUAA--------------------------------------------------

UCGGU-CGCCGAAGGAGC--AA-GCUCU-------------------------------GCGC-------------------------------------

----------AUAUGCAGAGUGAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGAGUGAAA-3'

RS013091 (Vibrio cholerae O1 biovar eltor str. N16961)

5'-UUGAAGACUG-CAG-GAGAGUGGUU-----------------GUUAACCAGAUUUUAACAUCUGAGCCAA--------------------------A

UAACC-CGCCGAAGAAGU--AA------------------------------------------------------------------------------

-----------------------AUCUUUCAGGUGCAUUAUUCUUAGCCAUAUAUUGGCAACGAAUAAGC--GAG-GA-CUGUAGUUGGAGG-3'

RS013092 (Vibrio vulnificus CMCP6)

5'-AUGAAGGCUA-CAG-GAGAGUGGUAA----------------UUAACCAUAUUUUAACAUUUGGUUAGU---------------------------C

AUACC-CGCCGAAGAAGU--AA------------------------------------------------------------------------------

-----------------------AUCUUUCAGGU-GCAAUAUUCUUAUUGGUUAUAUCAAGAGAAUAUGC--GAG-GA-CUGUAGUUGGAGG-3'

RS013093 (Xanthomonas campestris pv. campestris str. ATCC 33913)

5'-GUAACACGGU--GG-GAGAA-GCGGC----------------ACUG---------------------------------------------------

-CCGC-UGCCGAAGGCGC--AA-CA----------------------------------GCCC-------------------------------------

--------------------GUAAUCGCUCAGGC-----------------------------------C--CGA-UA-CC-AUCUUCAACA-3'

RS013094 (Xanthomonas campestris pv. campestris str. ATCC 33913)

5'------CAACU-CUG-GAGAGACCGG-----------------UUCA--------------------------------------------------C

UCCGG-CGCCGAAGGGGC--AC-GGAACGCAGGCAG-----------------------GCCA-------------------------------------

---CAGGCCAGGCCGCGUUCUUAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGCGA-3'

RS013095 (Xanthomonas axonopodis pv. citri str. 306)

5'------CAACU-CUG-GAGAGACCGGCC---------------GAUG---------------------------------------------------

-CCGG-CGCCGAAGGGGC--AC-GAAACGCAGGCAG-----------------------GCCA-------------------------------------

---CGCGCCAGGCCGCGUUUUUAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGCGA-3'

RS013096 (Xanthomonas axonopodis pv. citri str. 306)

5'-GCAACACGGU--GG-GAGAA-GCGGC----------------ACUG---------------------------------------------------

-CCGC-UGCCGAAGGCGC--AA-CA----------------------------------GCCC-------------------------------------

--------------------GUAAUCGCUCAGGC-----------------------------------C--CGA-UA-CC-AUCCGCAGUA-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.