Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-.....<<<<<.<<<.......<<<<........................................................................ .>>>>..<<<<<..<<<......<<........................................................................... ...................>>....>>>>>.>>>.............................................>>>>>>>>.....-3' |
| RS013004 (Mycobacterium avium subsp. paratuberculosis K-10) | 5'------UGCCU-CUG-GAAAGCGGUGCCGG-------------CCCUCGGGCC--------------------------------------------C GCACC-CGCCGAUGGGGA--AA-GGCGG-------------------------------CCGC------------------------------------- -----GACAGCAUCGGCCGCCGAAUCUCUCAGGC---------------------GCCCGGCGAACGGGU--GAA-GA-CAGAGGAAGAGGA-3' |
| RS013005 (Mycobacterium avium subsp. paratuberculosis K-10) | 5'-CGCAUUCGAG-CGG-GAGAGUUCCGUGACGGCCA--------GUCA--------------------------------------------------- -CGGA-CGCCGAAGGAGC--AACACCUC-------------------------------UCC-------------------------------------- -------------------GUCAACCUCUCAGGC------------------------------------ACCCG-GA-CCGCGCGAAACAU-3' |
| RS013006 (Mycobacterium tuberculosis H37Rv) | 5'------UGCCU-CUG-GAAAGCGGUGGC---------------GACCCCUGGCGGUC----------------------------------------C UCACC-CGCCGAUGGGGA--AA-GGCGAUU-----------------------------CACC------------------------------------- -UGACGGUGGACAGAGUCGCCGAAUCUCUCAGGC---------------------GCCUGGCGUGCAGGU--GAA-GA-CAGAGGGAGAGGG-3' |
| RS013007 (Mycobacterium tuberculosis CDC1551) | 5'------CAACU-CUG-GAGACAGGGACG---------------GUCGCACCGACC------------------------------------------G UGCCU-GACCGAAGGUGU--AGAGCGGC-------------------------------GCCA------------------------------------- -------UGAUGCGACGCCGC-AGACUCUCAGGU------------------------------------UUCAG-GA-CAGAGCGGGGAGG-3' |
| RS013008 (Mycobacterium tuberculosis H37Rv) | 5'-CGCUCUAGUG-CGG-GAGAGUUCUGUGGCUG-----------CCAGC-------------------------------------------------U ACGGA-CGCCGAAGGAGC--AAUACCUC-------------------------------UCC-------------------------------------- -------------------GUCAACCUCUCAGGC------------------------------------ACCCG-GA-CCGCGCGAGACUA-3' |
| RS013009 (Mycobacterium tuberculosis CDC1551) | 5'-UGACGCGAUG-UGG-GAGAA-CCUCC----------------AUGUC-------------------------------------------------- -GAGG-CGCCGUAGGAGC--AA-UCUCCU------------------------------CCCC------------------------------------- -------------------GAGAAUCUCUCAGGC------------------------------------CCAAG-CA-CCACACCGCCGAG-3' |
| RS013010 (Rhodococcus fascians) | 5'-UUCGACAACU-CUG-GAAAGUGGUGGGA--------------GCACC-------------------------------------------------- -CACC-CGCCCAAGGGGA--AA-GGUGCCGGU---------------------------GCGC---------------------------------GCAU GUCAGCGCGCCGUGUUCUACCGAAUCUCUCAGGC---------------------GCACGCGUCAGCGAGCACAC-GA-CAGAGGGGGAGGA-3' |
| RS013011 (Rhodococcus fascians) | 5'-CGCCUGCGCG---G-GAGAGUUCCGAGGC-------------AUCCAGU-----------------------------------------------C UCGGA-CGCCGAAGGAGC--AAUACCUC-------------------------------CCC-------------------------------------- -------------------GUCAAUCUCUCAGGC------------------------------------ACACG-GA-C---GCGUGUGGG-3' |
| RS013012 (Leifsonia xyli subsp. xyli str. CTCB07) | 5'-GAGGCCGAUG-CGG-GAGAGCUGCGGG---------------GGAGAACCCG--------------------------------------------C CCGCGGCACCGAAGGAGC--AA-UCCUC-------------------------------CCC-------------------------------------- -------------------GACAAUCUCUCAGGU------------------------------------ACGCG-UA-CCGCAUCGGACUG-3' |
| RS013013 (Leifsonia xyli subsp. xyli str. CTCB07) | 5'------CCACU-CUG-AAAAGCAGG------------------GCAGCGUCGACCCUCCGGGUCGAUCCCGCGGGACAUGCU---------------G G-CCU-CGCCCACGGUGA--AA-GCCGC-------------------------------GAAC------------------------------------- -----------GCUUCGCGGUGAAACUCUCAGGC------------------------------------CGGAU-GA-CAGAGGGGGAGUU-3' |
| RS013014 (Streptomyces coelicolor) | 5'------UCACU-CUG-GAAAGCAGGGCGGGU------------GUCGACGGCUUC------------------------------------------C GCUCU-CACCGACGGUGA--AA-GCCGGGCAGAGC------------------------UCCA------------------------------------- --------GGGCUCGCCCGGUGAAGCUCUCAGGU-----------------------------------UGAGAU-GA-CAGAGGGGGAGGC-3' |
| RS013015 (Streptomyces coelicolor) | 5'-UGAAUCCGCG-CGG-GAGAGUCCCCGG----------------CCGCG------------------------------------------------C CGGGG-CGCCGAAGGAGC--AA-GUCCC-------------------------------UCCC------------------------------------- -------------------UUGAAUCUCUCAGGC------------------------------------ACCGU-UA-CCGCGCGGGCGAG-3' |
| RS013016 (Streptomyces coelicolor) | 5'------CACAU-CUG-AAAAGCGGACCGCC-------------CCCGACGG----------------------------------------------C GGUCC-CACCCAAGGUGC--AA-GCCCUGA-----------------------------UCGC------------------------------------- -CGUACUCCGGUGGCCGUGGCGAACCUCUCAGGU-----------------------------------UCCGAU-GA-CAGAUGGGGAGGA-3' |
| RS013017 (Streptomyces coelicolor) | 5'-UGACCCCGCG-CGG-GAGAGUCCUCCGGAC------------AUCAC-------------------------------------------------C GGAGG-CGCCGAAGGAGC--AA-AUCCU-------------------------------CCCC------------------------------------- -------------------GG-AAUCUCUCAGGC------------------------------------UCACG-UA-CCGCACGGACGAG-3' |
| RS013018 (Bacillus subtilis) | 5'-AUGACAGCAA-GGG-GAGAGACCUGACC--------------GAAAACCUCGGGA-----------------------------------------U ACAGG-CGCCGAAGGAGC--AA-ACU---------------------------------GCGG------------------------------------- ------------------AGUGAAUCUCUCAGGC------------------------------------AAAAG-AA-CUCUUGCUCGACG-3' |
| RS013019 (Bacillus phage phBC6A52) | 5'-AUGAACCAUU-CAG-GAGAA-GGUC-----------------UAUU--------------------------------------------------- -GAUC-UACCGACGGGGC--AA-AAAGUUGUUA--------------------------UACC------------------------------------- ---------------AGCUUUGAAACUCUCAGGU-----------------------------CUUGGUUACAAG-UA---GAACUGCAUGG-3' |
| RS013020 (Bacillus thuringiensis serovar konkukian str. 97-27) | 5'-GGACGAAUCU-CUG-GAGAGACUCCCUCUCGCU---------UUAAAUAGCGUAGAGGAA------------------------------------A ACGAG-CACCGAAGGAGC--AAAUCCGC-------------------------------UACU------------------------------------- -------------AUAGCGGAUAAUCUCUCAGGU------------------------------------AAAAG-GA-CAGAGACAAGCGA-3' |
| RS013021 (Bacillus thuringiensis serovar konkukian str. 97-27) | 5'-AUGAACCAUU-CAG-GAGAA-GGUC-----------------UAUU--------------------------------------------------- -GAUC-UACCGACGGGGC--AA-AAAGUUGUUAACC-----------------------GACU------------------------------------- -------------------UUGAAACUCUCAGGU-----------------------------CUUGUUUACAAG-UA---GAACUGCAUGG-3' |
| RS013022 (Bacillus cereus ATCC 10987) | 5'-GGACGAAUCU-CUG-GAGAGACUCCCUCUCGCU---------UUAUAUAGCGUAGAGGAA------------------------------------A ACGAG-CACCGAAGGAGC--AAAUCCGC-------------------------------UACU------------------------------------- -------------AUAGCGGAUAAUCUCUCAGGU------------------------------------AAAAG-GA-CAGAGACAAGCGA-3' |
| RS013023 (Listeria innocua) | 5'-GUGAAUGUAA-ACA-GAGAGACUG------------------UGAAA-------------------------------------------------A G-CAG-CGCCGACGGGGA--AA-GCAUAAG-----------------------------UUAU------------------------------------- -------------------GUGAAACUCUCAGGC------------------------------------AAAAG-GA-UGUUUACGGGACG-3' |
| RS013024 (Listeria monocytogenes) | 5'-GUGAAUGUAA-GCA-GAGAGACUGC-----------------GAAAA-------------------------------------------------- -GCAG-CGCCGACGGGGA--AA-GCAUA-------------------------------UAUU------------------------------------- -----------------AUGUGAAACUCUCAGGC------------------------------------AAAAG-GA-UGUUUACGGGACG-3' |
| RS013025 (Listeria monocytogenes str. 4b F2365) | 5'-GUGAAUGUAA-GCA-GAGAGACUGC-----------------GAAAA-------------------------------------------------- -GCGG-CGCCGACGGGGA--AA-GCAUG-------------------------------UAUU------------------------------------- -----------------AUGUGAAACUCUCAGGC------------------------------------AAAAG-GA-UGUUUACGGGACG-3' |
| RS013026 (Staphylococcus epidermidis ATCC 12228) | 5'-UUGAUCAGUA-UUA-GAGAGAAUAGAGA--------------UCAAAACUUGAAUCAUUAUAAGUUAAACGUUUUUAGUCUAUUACAAUUUUGACUC UCUAU-CGCCGAAGGUGC--AA-GUG-------------------------------------------------------------------------- --------------AAAUAACGAAACUCUCAGGC------------------------------------AAAAG-GA-UAAUACUGUAACG-3' |
| RS013027 (Clostridium tetani E88) | 5'------AAACU-CUG-GAGAGACUCUUUU--------------UUAUA-------------------------------------------------A AAGAG-CACCGAAGGAGC--AA-GUUGGGUAAA--------------------------ACCA------------------------------------- -------------------AUGAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGCGUAGAAG-3' |
| RS013028 (Clostridium acetobutylicum ATCC 824) | 5'------AACCC-UUG-GAGAGACUC------------------UUAAA-------------------------------------------------- --GAG-CACCGAAGGAGA--AA-GCAUAAA-----------------------------AAAA------------------------------------- -------------------GCGAAACUCUCAGGU------------------------------------AAAAG-GA-CAGGGGACAGAUA-3' |
| RS013029 (Clostridium tetani E88) | 5'-UUGAAGAGUA-UAA-GAGAGAUCCUAU---------------UUUAA-------------------------------------------------- -AGGA-CGCCGAAGGGAC--AA-UCUAUGUUUA--------------------------UCCC------------------------------------- --------AAUAAAACAUAGAGAAAUUCUCAGGC------------------------------------AAAAG-AA-UUAUACUUUGAUA-3' |
| RS013030 (Clostridium sticklandii) | 5'-AUGAAGAGCA-AAA-GAGAGAAUC------------------GUUU--------------------------------------------------- --GAU-CGCCGAAGGGAC--AA-GUUUAUAUUU--------------------------GCCA------------------------------------- ------------AAUAUAAAUGAAAUUCUCAGGC------------------------------------AAAAG-GA-UUUUGCUUGGACA-3' |
| RS013031 (Clostridium tetani E88) | 5'-AUGAAGGUAA-UAG-GAGAGAGGUC-----------------UUUU--------------------------------------------------- -GACC-CACCGAAGAUGC--AAA----------------------------------------------------------------------------- ----------------------AAUCUUUCAGGU---------------------ACCAUUGUUUAUGGC--GAG-GA-CUGUUAUUGGACG-3' |
| RS013032 (Clostridium acetobutylicum ATCC 824) | 5'-AUGAAGUUAG-CGG-GAGAGCUUUGGCU--------------UUUGC-------------------------------------------------- -CAUA-CACCGAAGAAGU--AA------------------------------------------------------------------------------ -----------------------AUCUUUCAGGU-----------------------AUCUAUUUAAUUAGAGAU-GA-CCGCUAUUGGAUG-3' |
| RS013033 (Eubacterium acidaminophilum) | 5'-AUGAAGGUGG-CAG-GAGAGACCC-------------------AUGA-------------------------------------------------- G-GGG-CGCCGAAGAAGU--AA------------------------------------------------------------------------------ -----------------------AGCUUUCAGGC-----------------------------------U--UAG-GA-CUGUCAUCA-----3' |
| RS013034 (Eubacterium acidaminophilum) | 5'-AGACGAUACU-CUG-GAGAGACCA------------------UAUA--------------------------------------------------- --AGG-CACCGAAGGAGC--AA-AUUUAAUUGAGAUCUUUAUAUAAAUAAAAAAGCUCAUCCC-----------------------------------UU UUUUAGAUCAAGCGAUUAAAUGAAUCUCUCAGGU------------------------------------AAAAG-GA-CAGAGAACUGAAU-3' |
| RS013035 (Thermoanaerobacter tengcongensis MB4) | 5'------GGCCU-CUG-GAAAGUCUC------------------GUAAA-------------------------------------------------- --GAG-CACCGAAGGAGC--AA-UACAUAUGGAAG------------------------GCCA------------------------------------- ---------------UAUGUAGAAGCUCUCAGGU------------------------------------AGAAA-AA-CAGAGGAGUUGUG-3' |
| RS013036 (Thermoanaerobacter tengcongensis MB4) | 5'-AUGAAGAUAG-CGA-GAGAUUAUCUUCC--------------AUAAAUG-----------------------------------------------G AAGAU-AGCCGAAGGGGA--AA-UACAAAG-----------------------------GCCC------------------------------------- -------GCCAAGCCUUUGUAGAAGCUCUCAGGC------------------------------------GGCAG-GA-UCGCUAUCGGAUA-3' |
| RS013037 (Thermoanaerobacter tengcongensis MB4) | 5'------AUAUC-CCG-GAAAG-CCUC-----------------UAAA--------------------------------------------------- -GAGG-CACCGAAGGAGC--AA-UUCUUCUAU---------------------------AAAG------------------------------------- -------------------AAGAAUCUCUCAGGU------------------------------------AAACA-GA-CGGGGGAAUAAAA-3' |
| RS013038 (Thermoanaerobacter tengcongensis MB4) | 5'-AUGAAGAAUG-CGG-GAGAGACCC------------------UAACC-------------------------------------------------- --GGG-CGCCGAAGGAGC--AA-GCGGGUAUAUGGCCUGUAU-----------------ACUC------------------------------------- -------------------GUGAAACUCUCAGGC------------------------------------AAAAG-GA-CCGCAUUCGGACC-3' |
| RS013039 (Streptococcus.Viruses.Viruses.Viruses.Viruses) | 5'-UGAUGUCAUG-CAG-GAGAA-GAA------------------UUUU--------------------------------------------------- --UUU-CGCCGAAGGAGU--UA------------------------------------------------------------------------------ -----------------------UACUCUCAGGU------------------------GUUCAGUUUUUGAACGG-GA-CUGUUUGAUGGAC-3' |
| RS013040 (Streptococcus mutans UA159) | 5'-UGACGGACUU-CUG-GAGAGACC-------------------UACUA-------------------------------------------------- ---GG-CGCCGAAGGGGC--AA-GGCUG-------------------------------UUUG------------------------------------- -------------------CUCAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAAAAGAAAAA-3' |
| RS013041 (Streptococcus pneumoniae R6) | 5'-GGACGGAACU-CUG-GAGAGACC-------------------GUAAA-------------------------------------------------- ---GG-CACCGAAGGGGC--AA-GGCAG-------------------------------GCAA------------------------------------- ----------------CUGCUCAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGCUAGGAUA-3' |
| RS013042 (Streptococcus.Viruses.Viruses.Viruses.Viruses) | 5'------GACUU-CUG-GAGAGACCU------------------UAUU--------------------------------------------------- --AGG-CGCCGAAGGGGC--AA-GGCAU-------------------------------ACUG------------------------------------- -------------------CUCAAUCUCUCAGGC------------------------------------AAAAG-GA-CAGAAGGUAAAAU-3' |
| RS013043 (Streptococcus pyogenes MGAS8232) | 5'-UGAUGUCAUG-CAG-GAGA--AGAA-----------------UUUA--------------------------------------------------- -UUUU-CGCCGAAGGAGU--UA------------------------------------------------------------------------------ -----------------------UACUCUCAGGU------------------------GUUCAGUUUUUGAACGG-GA-CUGUUUGAUGGAC-3' |
| RS013044 (Streptococcus agalactiae NEM316) | 5'-AGACGGACUU-CUG-GAGAGACCUA-----------------UAAGUAGCAACAUCUUUGUAUUGACACCAAGAUGUGC-----------------U CUAGG-CGCCGAAGGGGC--AA-GAAGAGUAAAACAA----------------------CUCC------------------------------------- -------------------UCCAAUCUCUCAGGC------------------------------------AAAAG-GA-CAGAAGCUAAAAG-3' |
| RS013045 (Streptococcus agalactiae NEM316) | 5'-UGACGUCAUU-CAG-GAGAAGAAAG-----------------UUAGA-------------------------------------------------- -CUUU-CGCCGAAGGAAU--UA------------------------------------------------------------------------------ -----------------------CACUCUCAGGU-----------------------------GUCUUAAGACAG-GA-CUGAUUGAC-----3' |
| RS013046 (Caulobacter crescentus CB15) | 5'------GAACG-CUG-GAAAGCAGAGCG---------------CGCGC-------------------------------------------------C GCUCU-CGCCGAAGGAGC--AA-GGCCU-------------------------------GCCG------------------------------------- ---ACUGUCUGGUCGGCCGCUGAAUCUCUCAGGC-----------------------------------GCCAAG-GA-CAGCGGGGGCAGA-3' |
| RS013047 (Caulobacter crescentus CB15) | 5'-UCGACCCUCG-CGG-GAGACAUCGGGA---------------UUCGA-------------------------------------------------U CCCGA-GGCCGAAGGCGC--AA-CCG---------------------------------CCCC------------------------------------- -------------------GG-AAACGCUCAGGC------------------------------------AAAAG-GA-CCGCGCGGG-----3' |
| RS013048 (Caulobacter crescentus CB15) | 5'-AGGCCUCUCG-CGG-GAGAGAUCGGGC---------------CUUGC-------------------------------------------------- -CCGG-CGCUGAAGGCGA--AA-CCG---------------------------------CCCC------------------------------------- -------------------GG-AAACGCUCAAGC------------------------------------AGAAG-GA-CCGCGCGAGACGU-3' |
| RS013049 (Caulobacter crescentus CB15) | 5'-UUUAGGAACG-CUG-GAAAGCAGUCUC---------------UCCACCGGA---------------------------------------------G GGGCU-CGCCGAAGGAGC--AA-GGCCAA------------------------------ACCC------------------------------------G UCCGGCAGAGGGGCGAGGCCGGAAUCUCUCAGGC-----------------------------------CCAAGG-GA-CAGCGGGGGCGAC-3' |
| RS013050 (Bartonella henselae) | 5'------UUUUG-CGG-GAGAGUGCAGGC---------------UGCAAGUUUUUGG-----------------------------------------G UCUGC-CGCCGAAGGGGA--AA-AUA---------------------------------GCCC------------------------------------- -------------------GU-AAUCUCUCAGGC---------------------------------UCU--AAG-GA-CCGUAAAAGAAGA-3' |
| RS013051 (Bartonella henselae) | 5'------CAGAU-CUG-GAAAGUCGG------------------GAGG--------------------------------------------------G G-CCG-CGCCGAAGGUGU--AA-GCGAA-------------------------------AACU------------------------------------- -------------UUUUUCGCGAGUCUCUCAGGU-----------------------------------U--UGU-AA-CAGAGGGGUGCAG-3' |
| RS013052 (Rhodopseudomonas palustris CGA009) | 5'-CGACUGACAU-CUG-GAAAGAGACCCUGCCGGGC--------GAUCCCGGGA--------------------------------------------C GGGUC-CGCCGACGGGAU--AA------------------------------------------------------------------------------ -----------------------UGCUCUCAGGC------------------------------------ACAGC-GA-CAGAUGGGGCUCG-3' |
| RS013053 (Rhodopseudomonas palustris CGA009) | 5'-CUAAGUCGCGUCGG-GAGAGAUCGGCC---------------GCAA--------------------------------------------------G GCCGG-CGCCGAAGGAGC--AA-CCG---------------------------------CCCC------------------------------------- -------------------GG-AAACUCUCAGGC------------------------------------AAACG-GA-CCGCGCGGC-----3' |
| RS013054 (Brucella melitensis 16M) | 5'-UAAGACAACU-CUG-GAAAGUCGGGGG----------------CAAC-------------------------------------------------- -UCCG-CGCCGAAGGUGU--AA-GUAUGGCUUUAUAUAUA-------------------GCCA------------------------------------- ------------------UGCGAGUCUCUCAGGC-----------------------------------C--UGA-GA-CAGAGGGGCACGA-3' |
| RS013055 (Agrobacterium tumefaciens str. C58) | 5'-CGCAUCAUCG-UUGGGAGAAACCGC-----------------UUCA--------------------------------------------------U UGCGG-UGCCGAAGGAGC--AA-CCG---------------------------------CCCC------------------------------------- -------------------GG-AAACUCUCAGGC------------------------------------AAAAG-GACCAGCGAUGA-----3' |
| RS013056 (Agrobacterium tumefaciens str. C58) | 5'-CGACGGAACU-CUG-GAGAGAAGCCAC---------------CUUGACUAAAGG------------------------------------------A CGGCU-CGCCGAAGGGAU--AA------------------------------------------------------------------------------ -----------------------CAAUCUCAGGC-----------------------------------GACAAG-GA-CAGAGGGGGCUCU-3' |
| RS013057 (Sinorhizobium meliloti) | 5'-CGACCUCGUU--GG-GAGAAACCGG-----------------UUCGA-------------------------------------------------- UCCGG-UGCCGAAGGAGC--AA-CCG---------------------------------CCCC------------------------------------- -------------------GG-AAACUCUCAGGC------------------------------------CAAAG-GA-CC-AGCAAGGUGC-3' |
| RS013058 (Bordetella parapertussis) | 5'-AAACAGCACU-CUG-GAGAGACCUGGCGUGGCCACC------UUCGCGGUGCGCAAGCAG------------------------------------C CCAGG-CGCCGAAGGUGC--AAACCCGC-------------------------------UCGC------------------------------------- ----------------GCGGGGCAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGGAA-3' |
| RS013059 (Bordetella bronchiseptica) | 5'------AACAU-CUG-GAGAGUGGCGCGCG-------------GUAC--------------------------------------------------G GCGCC-CACCGAAGGGGA--U--CCCUG-------------------------------GCGC------------------------------------- -GUUUGCAGCGGCGCACGGGUGAAGCUCUCAGGU------------------------------------AAAUG-GA-CAGAUGGGGUUGC-3' |
| RS013060 (Bordetella bronchiseptica) | 5'-AAACAGCACU-CUG-GAGAGACCUGGCGCGGCCACC------UUCGCGGUGCGCAAGCAG------------------------------------C CCAGG-CGCCGAAGGUGC--AAACCCGC-------------------------------UCGC------------------------------------- ----------------GCGGGGCAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGGAA-3' |
| RS013061 (Bordetella bronchiseptica) | 5'-ACGCAUGUCG-CGG-GAGAGAGCGGCCG--------------AUUGC-------------------------------------------------G GCUGC-CGCCGAAGGCGC--AA-UUC---------------------------------GCCC------------------------------------- -------------------GG-AAUCGCUCAGGU-----------------------------------AACCCA-UA-CCGCGACUGCAUC-3' |
| RS013062 (Bordetella bronchiseptica) | 5'-ACGUGCAGUU-CGG-GAGAGACCGU-----------------CCAGC-------------------------------------------------G GACGG-CGCCGACGGAGC--AA-CCA---------------------------------CCCC------------------------------------- -------------------GG-AAACUCUCAGGC------------------------------------AAAAG-GA-CCGACCUGC-----3' |
| RS013063 (Ralstonia solanacearum) | 5'-GCCAUCCAUC-CGG-GAGAGCGCGUCGGCC------------GCAUACGGCC--------------------------------------------A GUCGC-CGCCGAAGGGGU--AG-C-----------------------------------ACCC------------------------------------- --------------------GAAAACUCUCAGGC---------------------------------AUC--CAG-GA-CCGGGUGGAUCGG-3' |
| RS013064 (Ralstonia solanacearum) | 5'-CGGCCGCACU-CUG-GAGAGCGGCGCCGC-------------GUCACCAUCGCG------------------------------------------G GCGCC-CACCGAAGGGGCUCAC-GGAACCG-----------------------------UCGC------------------------------------- ---ACGCGUUGUGUCGCUUCCCAAUCUCUCAGGU-----------------------------------ACCAAG-GA-CAGAGGGGCCACC-3' |
| RS013065 (Chromobacterium violaceum ATCC 12472) | 5'-UCCGGUUCUG-CGG-GAGAGAGGGGCC----------------ACG--------------------------------------------------- -CCCC-CGCCGAAGACGC--AA-GC----------------------------------UCCC------------------------------------- -------------------AU-AAUCGCUCAGGC------------------------------------AACCG-UA-CCGCAGCGCCGUA-3' |
| RS013066 (Chromobacterium violaceum ATCC 12472) | 5'-UUCGCGCAAU-CUG-GAGAGCGGCG-----------------UCCGCGC-----------------------------------------------G ACGCC-CACCGAAGGGGC--UAACGGCUUA-----------------------------UCCG------------------------------------- -----------------GCCGGAAAAUCUCAGGU------------------------------------GCAGG-GA-CAGAGGGGUGUGG-3' |
| RS013067 (Chromobacterium violaceum ATCC 12472) | 5'-AUCAAGCCGA-UUG-GAGAGAGGCCGC---------------CCCGC-------------------------------------------------G CGGCC-CACCGAAGGGGC--AA-GUGGCCUAAG--------------------------GCC-------------------------------------- -------------------GCGCAACUCUCAGGU-----------------------------------AAAAAG-GA-CAAGGGGAGAGGC-3' |
| RS013068 (Chromobacterium violaceum ATCC 12472) | 5'-CCGGGUCAUA-CAG-GAGAGAGCGGCU---------------UUCU--------------------------------------------------G GCCGC-CGCCGAAGGCGC--AA-GCGCA-------------------------------CCC-------------------------------------- -------------------GC-AAUCGCUCAGGC------------------------------------AAAAG-GA-CUGUAUCAUCGGG-3' |
| RS013069 (Neisseria meningitidis Z2491) | 5'-GGGAAAUGUG-CAG-GAGAGUGUUACACCCAAC---------UACAA-------------------------------------------------U GUAAC-CACCGAAGGCGC--A--GAC---------------------------------ACCC------------------------------------- -------------------UUAAAUCGCUCAGGU---------------------------------AUC--AGG-GA-CUGCACAUUGAAA-3' |
| RS013070 (Neisseria meningitidis Z2491) | 5'------ACAAU-CUG-GAGAGCGGCGUUGG-------------AAUAA-------------------------------------------------- -CGUC-CACCGAAGGGGA--GAAGGCCGUCUGAAC------------------------CACCAUUCAGACAACCGCGCAAAGCAGUGAGCAGACUGGUU UGCCAUCAUGCGGAUACGGCCGAAAAUCUCAGGU------------------------------------UCAAG-GA-CAGAUAGGGUCAU-3' |
| RS013071 (Nitrosomonas europaea ATCC 19718) | 5'------GCAAU-CUG-GAGAGUGCUG-----------------AAACAGC-----------------------------------------------U UCAGC-CACCGAAGGGGC--AU-GCGGAAAGUU--------------------------GACC------------------------------------- -------------------GUAAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGGGGUAAGU-3' |
| RS013072 (Nitrosomonas europaea ATCC 19718) | 5'-UUCAUCCAGG-CAG-GAGAGUGCGCUG---------------UAUCAAAAUA--------------------------------------------C AGUGU-CACCGAAGGCGU--AA-CC----------------------------------CCCC------------------------------------- -------------------GG-AAUCGCUCAGGU--------------------GUGGCCAUAAGGCUUG--AGU-AA-CUGCUUGUGAUUG-3' |
| RS013073 (Desulfotalea psychrophila LSv54) | 5'-AUGAACAUAG-CAG-GAGAGAUUUU-----------------UCCCAUGGCAGUACGGAUGG----------------------------------G GAAGG-CACCGAAGAAGU--AA------------------------------------------------------------------------------ -----------------------AUCUUUCAGGU------------------------------------CAAAG-GA-CUGCUAUGGGACG-3' |
| RS013074 (Desulfotalea psychrophila LSv54) | 5'------AGCCU-CUG-GAGAGUCUC------------------AUUAU-------------------------------------------------- --GGG-CACCGAAGGAGC--AA-GCCAGCGUGUA-------------------------GCUG------------------------------------- -------------------GUGAACCUCUCAGGU------------------------------------ACAAGGGA-CAGAGUGUAGCAG-3' |
| RS013075 (Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough) | 5'------AGCCU-CUG-GAGAGACCCC-----------------GCAA--------------------------------------------------- -GGGG-CACCGAAGGAGC--AA-GCCGC-------------------------------CCCA------------------------------------- ------------UGUGGCGGUGAAACUCUCAGGU------------------------------------AAAAG-GA-CAGAGGGAGGGCC-3' |
| RS013076 (Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough) | 5'-AUGACGACAG-CAG-GAGAGACCUCCC---------------CCAGA-------------------------------------------------G GGAGG-CGCCGACGAAGU--AA------------------------------------------------------------------------------ -----------------------AUCUUUCAGGC------------------------------------GAAAG-GA-CUGCUGUCCGACG-3' |
| RS013077 (Shewanella oneidensis MR-1) | 5'-AUGAAGGUAG-CAG-GAGAGUGGGGA----------------AUUAA-------------------------------------------------- -CCCCACACCGACGAGGC--AA-CUUUGUUGUUGGAAGCAU------------------UCCA------------------------------------- ------------UAAACAAAGCACUCUUUCAGGU--------------------------GCCGCAAGGC--GUG-GA-CUGUUACUGGACG-3' |
| RS013078 (Shewanella oneidensis MR-1) | 5'------AGCCU-CUG-GAGAGACUACCGAUUGCA---------UUAACUUGCAAUAAU---------------------------------------A GGUGG-CGCCGAAGGCGA--AA-GUG---------------------------------UCGC------------------------------------- ---UGUGUUGUUAAGCGACGCGAAACGCUCAGGC------------------------------------AAAAG-GA-CAGAGGAGAGGAU-3' |
| RS013079 (Erwinia carotovora subsp. atroseptica SCRI1043) | 5'-UUGAAGCCAA-CUG-GAGAGAGGUUGC---------------GAUGC-------------------------------------------------- -AACC-CACCGAAGGGGC--AA-GCAGC-------------------------------UCUG------------------------------------- ---------------CUGCGU-AAACUCUCAGGU-----------------------------------AAAGCG-GA-CAGAGGGAGUGGC-3' |
| RS013080 (Erwinia carotovora subsp. atroseptica SCRI1043) | 5'-CCGCUCCUCG-CAG-GAGAGAGGGCGUGUACUCCAGCAUAC-UUCAAGCUACAUGUACGUUGGCAUAAAGUAUA----------------------A CGCUC-CGCCGAAGGCGC--AA-AC----------------------------------UCCC------------------------------------- -------------------AU-AAUCGCUCAGGC-----------------------------------UACCCU-AA-CUGCGAAUU-----3' |
| RS013081 (Haemophilus influenzae Rd KW20) | 5'-AUGAAGGUAG-CUG-GAGAGCGGGAA----------------AUUGA-------------------------------------------------- -CCCCACACCGACGAUGU--AA------------------------------------------------------------------------------ ----------------------AAUCUUUCAGGU------------------------------------GCGAU-GG-CAGGGACUGUUAC-3' |
| RS013082 (Haemophilus influenzae Rd KW20) | 5'-GGACGAACCC-UUG-GAGAGAUCCAUU---------------UUAGA-------------------------------------------------A AUGGA-CGCCGAA-GCGC--AA-AAGAGCGGUUAAUUUU--------------------UCAA------------------------------------- -------------UCGUUUUUCAAACGCUCAGGC------------------------------------AAAAG-GA-CAGGGGCAAAAGA-3' |
| RS013083 (Haemophilus ducreyi 35000HP) | 5'------AACCC-UUG-GAGAGAUCCACUCUGUACUAUAGUACAGAAAA-------------------------------------------------- -UGGA-CGCCGAAGGCGC--AA-AUAUA-------------------------------AAGC------------------------------------- -----------AAAUUUAUGUGAAACGCUCAGGC------------------------------------AAAAG-GA-CAGGGGAGAAAAG-3' |
| RS013084 (Pasteurella multocida subsp. multocida str. Pm70) | 5'------AACCC-UUG-GAGAGAGCCG-----------------UUAUAUUAAAAAGAGAUAA-----------------------------------A ACGGC-CGCCGAAGGCGC--AA-AAAGA-------------------------------GCGG------------------------------------- ---UUAAUUUUUCCGUUUUUUCAAACGCUCAGGC------------------------------------AAAAG-GA-CAGGGGCAACAAG-3' |
| RS013085 (Pasteurella multocida subsp. multocida str. Pm70) | 5'-AUGAAGGUAG-CUG-GAGAGUAGGGA----------------AUUGA-------------------------------------------------- -CCCUACGCCGACGAGGU--AA------------------------------------------------------------------------------ ----------------------ACUCUUUCAGGC-----------------------GCUGAUUAUAAGC--AGG-GA-CUGUUACUGGACG-3' |
| RS013086 (Acinetobacter sp. ADP1) | 5'-AUGAUUAUUG-CAG-GAGAGAUAUUCU---------------UGCAA-------------------------------------------------A GGAUA-CGCCGAAGGAGC--AA-CG----------------------------------ACCC------------------------------------- -------------------CGGAAACUCUCAGGC------------------------------------AGAAG-GA-CUGUAAUAAUCGA-3' |
| RS013087 (Acinetobacter sp. ADP1) | 5'------AUAAU-CUG-GAGAGAAGUAUU---------------UCAAA-------------------------------------------------A AUACU-CACCGAAGGGGA--UG-GUACG-------------------------------UAGA------------------------------------U UUAUGGAAAUCUAUAGCUACCGAAGCUCUCAGGU------------------------------------ACCCU-GA-CAGAUGGGGCAAC-3' |
| RS013088 (Photobacterium profundum) | 5'------AGCCU-CUG-GAGAGACCCG-----------------UUAAA-------------------------------------------------- UCGGG-CGCCGAAGGAGC--AA-GCUUU-------------------------------CCUU-------------------------------UUUGCU GUUUUAACAUGCAUGGAAAGUGAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGAGAUAAG-3' |
| RS013089 (Photobacterium profundum) | 5'-AUGAAGAUAG-CAG-GAGAGUGGCA-----------------UAUUAUUCGCUAGCAGAAUCAUUCUGAUACGAGUA-------------------U AAGCC-CGCCGAAGAAGU--AA-GCGUUCUUA---------------------------AACC-------------------------------GUUUGU UACUGUUCAAACACAAGACGUUAAUCUUUCAGGC--ACUGGAUUACAUACCUUUUAACAAGGUAUCCGGU--AUG-GA-CUGUUAUUGGAGG-3' |
| RS013090 (Vibrio cholerae O1 biovar eltor str. N16961) | 5'------AACCU-CUG-GAGAGAACCG-----------------UUUAA-------------------------------------------------- UCGGU-CGCCGAAGGAGC--AA-GCUCU-------------------------------GCGC------------------------------------- ----------AUAUGCAGAGUGAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGAGUGAAA-3' |
| RS013091 (Vibrio cholerae O1 biovar eltor str. N16961) | 5'-UUGAAGACUG-CAG-GAGAGUGGUU-----------------GUUAACCAGAUUUUAACAUCUGAGCCAA--------------------------A UAACC-CGCCGAAGAAGU--AA------------------------------------------------------------------------------ -----------------------AUCUUUCAGGUGCAUUAUUCUUAGCCAUAUAUUGGCAACGAAUAAGC--GAG-GA-CUGUAGUUGGAGG-3' |
| RS013092 (Vibrio vulnificus CMCP6) | 5'-AUGAAGGCUA-CAG-GAGAGUGGUAA----------------UUAACCAUAUUUUAACAUUUGGUUAGU---------------------------C AUACC-CGCCGAAGAAGU--AA------------------------------------------------------------------------------ -----------------------AUCUUUCAGGU-GCAAUAUUCUUAUUGGUUAUAUCAAGAGAAUAUGC--GAG-GA-CUGUAGUUGGAGG-3' |
| RS013093 (Xanthomonas campestris pv. campestris str. ATCC 33913) | 5'-GUAACACGGU--GG-GAGAA-GCGGC----------------ACUG--------------------------------------------------- -CCGC-UGCCGAAGGCGC--AA-CA----------------------------------GCCC------------------------------------- --------------------GUAAUCGCUCAGGC-----------------------------------C--CGA-UA-CC-AUCUUCAACA-3' |
| RS013094 (Xanthomonas campestris pv. campestris str. ATCC 33913) | 5'------CAACU-CUG-GAGAGACCGG-----------------UUCA--------------------------------------------------C UCCGG-CGCCGAAGGGGC--AC-GGAACGCAGGCAG-----------------------GCCA------------------------------------- ---CAGGCCAGGCCGCGUUCUUAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGCGA-3' |
| RS013095 (Xanthomonas axonopodis pv. citri str. 306) | 5'------CAACU-CUG-GAGAGACCGGCC---------------GAUG--------------------------------------------------- -CCGG-CGCCGAAGGGGC--AC-GAAACGCAGGCAG-----------------------GCCA------------------------------------- ---CGCGCCAGGCCGCGUUUUUAAACUCUCAGGC------------------------------------AAAAG-GA-CAGAGGGGCGCGA-3' |
| RS013096 (Xanthomonas axonopodis pv. citri str. 306) | 5'-GCAACACGGU--GG-GAGAA-GCGGC----------------ACUG--------------------------------------------------- -CCGC-UGCCGAAGGCGC--AA-CA----------------------------------GCCC------------------------------------- --------------------GUAAUCGCUCAGGC-----------------------------------C--CGA-UA-CC-AUCCGCAGUA-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

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