Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-.....<<<...<<<........>>>..>>>....<<<<.......>>>>..........................................<<<.<< .....<<<..<<<<<.......>>>>>..>>.>...>>.>>>.....<<<<.<<<<....>>>>>>>>....<<<<<<...................... .........>>>.>>>......<<<<<<<<..<<<<<<.......>>>>>>......>>>>>>>>........<<<<<<....>>>>>>-3' |
| RS011466 (Simian retrovirus 1) | 5'-UGGCGCCCAACGUGGCGUUGGAUACGAGGGAAUUUCGUGAGGAAGACGACGCGGUUUGCCGGCCCG--GAUUAAAAGAGAAACGAAAGUAAACU-UU CUUCGGCCGCCGCGGGAGCCUGCCGCGUAGGACCUGAA-AGUAAGUGGUGCGCUCGGAUAUGGGGCAGGAAUUAAGCCAGCACGAACGUUAUGUGGAACA AUUAAAACAGGCUUUAAAGACACGGGGAGUAAAGGUUAAAUAUGCUGAUCUCUUAAAGUUUUUUGAUUUUGUAAAGGAUACUUGUCCUU-3' |
| RS011467 (Simian retrovirus 2) | 5'-UGGCGCCCAACGUGGGGCUGGAUACGAGGGAAUCCUGUGAGGAAGAGAGCGCG-UAACACGGCCGGCAGUCA-AAGUGAAAG-----AAAAACC-UU CCA--GCUGCCGCGGGAACCUGCCGCGUCGG-CAAUAAAGGUAAGCGUUGCGUUCGAAUAUGGGACAAGAAUUAAGCCAACAUGAACUUUAUGUAGAACA GUUAAAAAAGGCUCUAAAGACACGGGGAGUAAAGGUUAAGGGUAAUGAUUUACUCAAAUUCUUUGAUUUUGUAAAGGAUACCUGCCCUU-3' |
| RS011468 (Mason-Pfizer monkey virus) | 5'-UGGCGCCCAACGUGGGGCUGGAUACGAGGGAAUUUCGUGAGGAAGACGACGCG-UUCGCCGGCCGGC-GAUUAAAAGUGAAAG-----UAAACUCUC UU--GGCCGCCGCGGGAACCUGCCGCGUUGGACCU-GAAAGUAAGUGUUGCGCUCGGAUAUGGGGCAAGAAUUAAGCCAGCAUGAACGUUAUGUAGAACA AUUGAAGCAGGCUUUAAAGACACGGGGAGUAAAGGUUAAAUAUGCUGAUCUUUUGAAAUUUUUUGAUUUUGUGAAGGAUACUUGUCCUU-3' |
| RS011469 (Simian retrovirus 2) | 5'-UGGCGCCCAACGUGGGGCUGGAUACGAGGGAAUCCUGUGAGGAAGAGAGCGCG-UAACACGGCCGGCAGUCA-AAGUGAAAG-----AAAAACC-UU CCA--GCUGCCGCGGGAGCCUGCCGCGUCGG-CAAUAAAGGUAAGCGUUGCGCUCAAAUAUGGGACAAGAAUUAAGCCAACAUGAACUCUAUGUAGAACA AUUAAAAAAGGCUCUAAAGACACGGGGAGUAAAGGUUAAGGGUAAUGAUUUGCUCAAAUUCUUUGAUUUUGUAAAGGAUACCUGCCCUU-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

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