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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-.........<<<<<<<<<<<<<<<<<<<<<.<<............................................................>>.>

>>>>>>>>>>>>>>>>>>>>.........-3'

 
RS011409 (Oryza sativa (japonica cultivar-group))

5'-GUGCUUGCAGGUGCAGCACCAUCAAGAUUCACA-----UCGAGUUCAUCCCUAAACGAGA-UCGAGGUUGGC------UGACU-AUAUGUGA-UGAG

AAUCUUGAUGAUGCUGCAUCAGCAAACGC-3'

RS011410 (Oryza sativa (japonica cultivar-group))

5'-GUGUUUGCGGGCGUGGCAUCAUCAAGAUUCACA-----UC-CAUGCAUAUAUCACAAGAC-GCAC-----AUA----UACAUC-CGAUUUGGCUGAG

AAUCUUGAUGAUGCUGCAUCCGCAGACAA-3'

RS011411 (Oryza sativa (japonica cultivar-group))

5'-CUUGUUGCGGGUGCAGCGUCAUCAAGAUUCAC-------G-UGUGCCGCACGGCACACG--UAUCGGUUUUCA----AGUGUAG-UCAUCGUGCGUG

AAUCUUGAUGAUGCUGCACCAGCAAAGAG-3'

RS011412 (Arabidopsis thaliana (thale cress))

5'-UUGUUGGCUGCUGUGGCAUCAUCAAGAUUCACA-----UC-UGUUGAUGGACGGUGGUGAUUCACUCUCCACA----AAGUUCUCUAUGAAAAUGAG

AAUCUUGAUGAUGCUGCAUCGGCAAUCAA-3'

RS011413 (Arabidopsis thaliana (thale cress))

5'-GUAGUCGCAGAUGCAGCACCAUUAAGAUUCACAAGAGAUG-UGGUUCCCUUUGCUUUCGCCUCUCGAUCCGCAGAAAAGGGUUCCUUAUCGAGUGGG

AAUCUUGAUGAUGCUGCAUCAGCAAAUAC-3'

RS011414 (Arabidopsis thaliana (thale cress))

5'-UUGUUUGUAGGCGCAGCACCAUUAAGAUUCACA--------UGGAAAUUGAUAAAUACC---CUAAAUUAGG------GUUUUGAUAUGUAUAUGAG

AAUCUUGAUGAUGCUGCAUCAACAAUCGA-3'

RS011415 (Arabidopsis thaliana (thale cress))

5'-UUGUUUGCUAUUGCAACAUCUUCAAGAUUCAGA-----AA-UCAGAUUCUCUUAUGGGU--UUUCUUUUGAGCC---UUUAUU--UUUUGGUUUGAG

AAUCUUGAUGAUGCUGCAGCGGCAAUUAA-3'

RS011416 (Arabidopsis thaliana (thale cress))

5'-CUGUUCGCUGUUGGAGCAUCAUCAAGAUUCACAAAUCAUC-AAGUAUUCGUGUAAAUAA--ACCCAUUUAUGAUUAGAUUUUUGAUGUAUGUAUGAG

AAUCUUGAUGAUGCUGCAGCUGCAAUCAG-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.