Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-..........................................................<<<<<<<<<<............<<<<<<.<<.......< <<<.<<<<........>>>>....<<<<<<.....>>>>>>...>>>>.>>>>>>>>...............>>>>>>>>>>........-3' |
| RS010986 (Escherichia coli) | 5'-CAAAA-GUCCCUGAAC--UCUCAAGCGAA-UCCGCAAUCAAAUAU-UCUGCCCAUG-CGGGGAAGGAUGAGAA-------GCUUCGACU---AAGGU UCGGCUCGAGCGUCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCA-3' |
| RS010987 (Escherichia coli) | 5'-CAAAA-GUCCCUGAAC--UUCCCAACGAA-UCCGCAAUUAAAUAU-UCUGCCCAUG-CGGGGAAGGAUGAGAA-------GCUUCGACC---AAGGU UCGACUCGAGCGCCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCA-3' |
| RS010988 (Escherichia coli) | 5'-CAAAA-GCCCCGGAAU--UCUCAAACGAA-UCCGCAAUCAAAUAU-UCUGCCCAAG-CGGGGAAGGAUGAGAA-------GCUUCGACC---AAGGU UCGACUUGAGCGCCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCA-3' |
| RS010989 (Escherichia coli CFT073) | 5'-CAAAA-GCCCCUGAAU--UCUCAAACGAA-UCCGCAAUUAAAUAU-UCUGCCCAUG-CGGGGAAGGAUGAGAA-------GCUUCGACC---AAGGU UCGACUCGAGUGCCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGUAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCA-3' |
| RS010990 (Escherichia coli) | 5'-C--AC-AGCGCAUGUG--GUAACUUCGGU-GAGAUUGUGAAAGUU-UGCACUCAU--CGGGGAAGGGUGAGAA-------CCUUCGACU---AAGGU UCGAUUCGAGCGAAAGCGAGAGAGCGUUGCCACAGGCAACGGCCCGAA-GGUGAGGAGCGAAGCGACGAAUAAUCCUUCCCCCACCACCA-3' |
| RS010991 (Escherichia coli W3110) | 5'-CACCACAGCGAUGUGG--UAAC-UUCGGUGAGAUUGUGAAAGUU--UGCACUCAU--CGGGGAAGGGUGAGAA-------CCUUCGACU---AAGGU UCGAUUCGAGCGAAAGCGAGAGAACGUUGCCACAGGCAACGGCCCGAAGGGUGAGGAGCGAAGCGACGAAUAAUCCUUCCCCCACCACCA-3' |
| RS010992 (Salmonella enterica subsp. enterica serovar Typhi) | 5'-CAA---GCAGCAUAAUGAAUUUAUCCCGU-GGUGGGGUUCCCGA--GCGGCCAAAG--GGAGCAGACUGUAAAUCUGCCGUCAUCGACUUCGAAGGU UCGAUUCGAGCGC-AGCGAGAAAGCGUUGCCGUAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUCAUCCUUCCCCCACCACCA-3' |
| RS010993 (Salmonella typhimurium LT2) | 5'-CUCCC-GUCGCGUAUC--UUAUCCCCGUUAAGCACACUGUCUCAUAUCUCUCCGUA-C-GGGAAGGAUGAGAA-------GCUUCGACU---AAGGU UCGAUUCGAGCGC-AGCGAGAACGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUCAUCCUUCCCCCACCACCA-3' |
| RS010994 (Salmonella enterica subsp. enterica serovar Typhi) | 5'-CAGAAAGCAUCU-AAC--CUUCAUUCGACAUCGGUUUGUCAUAAU-UCUACCCAUG-UGGGGAAGGAUGAGAA-------GCUUCGACU---AAGGU UCGAUUCGAGCGAAAGCGAGAGAACGUUGCCGCAGGCAACGACCCGAAGGGCGAAACGCGCAGCGCUGAGUCAUCCUUCCCCCACCACCA-3' |
| RS010995 (Salmonella typhimurium LT2) | 5'-CUCCC-GUCGCGUAUC--UUAUCCCCGUUAAGCACAGUGUCUCAUAUCUCUCUGUA-C-GGGAAGGAUGAGAA-------GCUUCGACC---AAGGU UCGAUUCGAGCGC-AGCGAGAAAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUCAUCCUUCCCCCACCACCA-3' |
| RS010996 (Salmonella typhimurium LT2) | 5'-CUUCC-GUCGCGUAUC--UUAUCCCCGUUAAGCAUAGUGUCUCAUAUCUCUCUGUA-C-GGGAAGGAUGAGAA-------GCUUCUACC---AGGGU UCGAUUCGAGCGC-AGCGAGAAAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUCAUCCUUCCCCCACCACCA-3' |
| RS010997 (Salmonella typhimurium LT2) | 5'-CACUACAGCGAUGUAG--UUA-ACUCGA--UGAGCAAUGCAGAAG-UUUGCACUUGUCGGGGAAGGGUGAGAA-------CCUUCGAUU---AAGGU UCGACUCG------AGCGAAAGAACGUUGCCAACGGUAACGGCCCGUAGGGUGAGGAGUGAAGCGACGAAUAAUCCUUCCUCCACCACCA-3' |
| RS010998 (Salmonella typhimurium LT2) | 5'-CUCCC-GUCGCGUAUC--UUAUCCCCGCUAAGCACAGUGCCUUAUAUCUCUCUGUA-C-GGGAAGGAUGAGAA-------GCUUCGACU---AAGGU UCGAUUCGAGCGUCAGCGAGAAAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUCAUCCUUCCCCCACCACCA-3' |
| RS010999 (Shigella flexneri 2a str. 2457T) | 5'-CAAAA-GCCCCGGAAU--UCUCAAACGAA-UCUGCAAUCAAAUAU-UCUGCCCAAG-CGGGGAAGGAUGAGAA-------GCUUCGACC---AAGGU UCGACUUGAGCGCCAGCGAGAGAGCGUUGCCGCAGGCAACGACCCGAAGGGCGAAGCGCGCAGCGCUGAGUAAUCCUUCCCCCACCACCA-3' |
| RS011000 (Yersinia pestis KIM) | 5'-AAUAU-CUCCCU-CUC--CCAAAUAC-AC-UAAGCAAUAAAAUAG-UUCUCAUAUC-UGGGGAAGG-UAAGAA-------CCUUCGAC----AAGGU UCGCGCCGAGCGU-AGCGAGACAACGACGC--AAAGCGGCGGCCCGAAGGGUGAGGAACGCAGUGACGAAUAAUCCUUCCCCCACCACCA-3' |
| RS011001 (Yersinia pestis KIM) | 5'-AAUAAUAUCUCU-CUC--UCCCAAAUACACUAAGCAAUAAAAUAG-UUCUCAUAUC-UGGGGAAGG-UAAGAA-------CCUUCGAC----AAGGU UCGCGCCGAGCGU-AGCGAGACAACGACGC--AAAGCGGCGGCCCGAAGGGUGAGGAACGCAGUGACGAAUAAUCCUUCCCCCACCACUA-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

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