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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-<<<<<<<..........................................<<...>>.........................................

.>>>>>>>-3'

 
RS008703 (Oryza sativa)

5'-AGUAUCAGAG--GAUGA-AACCUUAUAACAAUCUUAGGACACCUUCUGACACAGUGCA----AUCACACUGUGAAUGAGAAGG-CUUUUCUUU-CUG

AUGAUGCU-3'

RS008704 (Oryza sativa)

5'-AGUAUCAGAG--GAUGA-AACCUUAUAACAAUCUUAGGACACCUUCUGACACAGUGCU----AUAACACUGUGAAUGAGAAGG-CUUUUCUUU-CUG

AUGAUGCU-3'

RS008705 (Oryza sativa)

5'-AGUAUCAGAG--GAUGA-AACCUUAUAACAA---UCUUAGGACACCUUCUGACACAGUGCA-AUCACACUGUGAAUGAGAAGG-CUUUUCUUU-CUG

AUGAUGCU-3'

RS008706 (Zea mays)

5'--GCAUGAGAG--GAUGA-AAGCUUGAAACAAUCUUAGGACACCUUCUGACACAGCGCGUUACAUCACGUUGUGAAUGAGAAGG-CAAUUCUUUUCUG

AUGAUGC--3'

RS008707 (Arabidopsis thaliana (thale cress))

5'--UGGAGAAAUAUGAUGAUAAUAAUCAGUAAAU-AUCUUAGGACACCUUCUGACACAGUUUA-------CUGUGUAUGAGAAUGACUUGUUAAU-CUG

AUUCUCCA-3'

RS008708 (Arabidopsis thaliana (thale cress))

5'-CUGGAGAAAU--GAUGAGAA--AUCAGAUAA--AUCUUAGGACACCUUCUGACACAGAUU--------CUGUGUAUGAGAAUGACAUCAUAUU-CUG

AUCUUCAG-3'

RS008709 (Arabidopsis thaliana (thale cress))

5'-CUGGAGAAAU--GAUGAGAA--AUCAGAUAA--AUCUUAGGACACCUUCUGACACAGAUU--------CUGUGUAUGAGAAUGACAUCAUAUU-CUG

AUCUUCAG-3'

RS008710 (Arabidopsis thaliana (thale cress))

5'-CUGGAGAAAU--GAUGAGAA--AUCAGAUAA--AUCUUAGGACACCUUCUGACACAGAUU--------CUGUGUAUGAGAAUGACAUCAUAUU-CUG

AUCUUCAG-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.