English
Français

Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-...<<<<<.........................................................................................

...................>>>>>...-3'

 
RS008479 (Neurospora crassa)

5'-CUUGGGCUUCCGUGAUGAUUUA--CAAUCAUAAGCAUAGUUCA-UCUGAAUUA----------UUCAUGAAGACAACUACG--UAUU--UUAUAGUC

UUUCGCUCCCAUCUGAUUUUGCCCUUU-3'

RS008480 (Yarrowia lipolytica CLIB122)

5'-CCGCAA-----AUGAUGAUUAA----GAA-UUCGCAUAGUUCA-UCUGACUA-----------UCAAUGAAGAAUUAAUCU--UAGC-----AUGUC

UUUCGCUCCUAUCUGA---UUUUUAUC-3'

RS008481 (Debaryomyces hansenii)

5'-GCAGUGAA---AUGAUGAUGAAAAUAUUA-AUUGCAUAGUUCA-ACUGAUAUAU------------AUGAAGAUAAAAAUA-CCAUC--AAAUAGUC

UUUCACCCCUAUCUGA---UUCACAAU-3'

RS008482 (Kluyveromyces lactis NRRL Y-1140)

5'-UAUAUCUUA--AUGAUGAUACAUUUCCUUCAGUGCAUAGUUCA-ACUGAUAAGGAUAACUUCCUAUAUGAAGAUAAAAAUU--CAUCGAAUUUAGUC

UUUCGCUCCUAUCUGA---AAUCUCUG-3'

RS008483 (Saccharomyces cerevisiae (baker's yeast))

5'----UGUUA---AUGAUGAUAACC---AAA-GAUGCAUAGUUCA-ACUGAUUGAACAUACUAUCGAAAUGAAGAUAAAAAUUUCCAUCGAAAUUAGUC

UUUCGCUCCUAUCUGA-----AC-----3'

RS008484 (Saccharomyces cerevisiae (baker's yeast))

5'----UGUUA---AUGAUGAUAACC---AAA-GAUGCAUAGUUCA-ACUGAUUGAACAUACUAUCGAAAUGAAGAUAAAAAUUUCCAUCGAAAUUAGUC

UUUCGCUCCUAUCUGA-----ACA----3'

RS008485 (Zygosaccharomyces rouxii)

5'-AAGAAGCC---CUGAUGAC------CAACCAAUGCAUAGUUCACACUGAAUGCAA--------UUUGUGAAGAUA-------CCAACGAUUUUAGUC

UUUCGCUCCUAUCUGA-CUGGCUUUCU-3'

RS008486 (Schizosaccharomyces pombe (fission yeast))

5'--------UUCUUUGAUGAUUCC----AAA-AAAGCAUAGUUCA-ACUGAGCAUCGU-------AUGCUGAAACUUU---UU-CCAUC------UGAU

UUGCACGUCAGUCUGA------------3'

RS008487 (Schizosaccharomyces pombe (fission yeast))

5'-AAAGGAUUUCUUUGAUGAUUCC----AAA-AAAGCAUAGUUCA-ACUGAGCAUCGU-------AUGCUGAAACUUU---UU-CCAUC------UGAU

UUGCACGUCAGUCUGA---GAUUUCUC-3'

RS008488 (Danio rerio (zebrafish))

5'-GUGAUGCAA--AUGAUGAC-------------UGCAUAGUUCA-GCAGAAUU-----------UCCAUGUAGAACA-------CAGA--GCAAUGUC

UUUCGCUCCUAGCUGA---UGCAUCAC-3'

RS008489 (Danio rerio (zebrafish))

5'-GUGAUGCAG--AUGAUGAC-------------UGCAUAGUUCA-GCAGAAAC-----------UCCAUGUAGAACA-------CAGA--GCAAUGUC

UUUCGCUCCUAGCUGA---UGCAUCAC-3'

RS008490 (Mus musculus (house mouse))

5'-CCGAUACC---AUGAUGAU--------AA-----CAUAGUUCA-GCAGACUUA----------ACUCUGAUGAACA--------AUC-----AUGUC

UUUCGCUCCUAUCUGA---UGUAUCUG-3'

RS008491 (Mus musculus (house mouse))

5'---GAUACC---AUGAUGAU--------AA-----CAUAGUUCA-GCAGACUUA----------ACUCUGAUGAACA--------AUC-----AUGUC

UUUCGCUCCUAUCUGA---UGUAUC---3'

RS008492 (Homo sapiens (human))

5'-CCGAUACA---AUGAUGAU--------AA-----CAUAGUUCA-GCAGACUA--------------ACGCUGAUGA------GCAAU--AUUAAGUC

UUUCGCUCCUAUCUGA---UGUAUCUG-3'

RS008493 (Oryza sativa)

5'--AAGGUCGA--GUGAUGAG-------CAAAAAUGCAUAGUUCA-GAUGAUCAAACCCUA----GUGGUUAUGAUUACUUUG---AAU--AAAUAGUC

UUUCGCUCCUAACUGA---CGGCCUU--3'

RS008494 (Oryza sativa)

5'-UGAGGUCGG--AUGAUGAG-------CAA--UUGCAUAGUUCA-AAUGAUUACA---------UUUGUAACUAUUAUGGUU-ACAUC---UAAAGUC

UUUCGCUCCUAACUGA---CGACUUUA-3'

RS008495 (Oryza sativa (japonica cultivar-group))

5'-UGAGGUCGG--AUGAUGAG-------CAA--UUGCAUAGUUCA-AAUGAUUACA---------UUUGUAACUACUAUGAUU-ACAUC---UAAAGUC

UUUCGCUCCUAACUGA---CGACUUUA-3'

RS008496 (Oryza sativa)

5'-----GA-----GUGAUGAG-------CAAAAAUGCAUAGUUCA-GAUGAUCAAACCCUA----GUGGUUAUGAUUACUUUG---AAU--AAAUAGUC

UUUCGCUC--------------------3'

RS008497 (Oryza sativa)

5'-UGAGGUCGG--AUGAUGAG-------CAA--UUGCAUAGUUCA-AAUGAUUACA---------UUUGUAACUAUUAUGGUU-ACAUC---UAAAGUC

UUUCGCUCCUAACUGA---CGACUUUA-3'

RS008498 (Zea mays)

5'-UGAGGUCGG--GUGAUGAG------------UUGCAUAGUUCA-GAUGAUCAACCCUC-----GUGGUUCUGAUUACAUUG---AGU--AAUUAGUC

UUUCGCUCCUAUCUGA---CGACCUUA-3'

RS008499 (Arabidopsis thaliana (thale cress))

5'--AGGGUCAA--GUGAUGAU-------UAAUAAUGCAUAGUUCA-AAUGAUC---------------UCCAUGAUUACUAUU-CAGUA--GCACAGUC

UUUCGCUCCUAUCUGA---UGGCCCU--3'

RS008500 (Arabidopsis thaliana (thale cress))

5'-AGGGAUCAA--GUGAUGAU-------UGAUAACGCAUAGUUCA-GAUGAUAAAU---------UCUAUUAUGAUUAACAUCUUCAGC----AUAGUC

UUUCGCUCCUAUCUGA---UGACCCUU-3'

RS008501 (Arabidopsis thaliana (thale cress))

5'------UCAA--GUGAUGAU-------UGAUAACGCAUAGUUCA-GAUGAUAAAU---------UCUAUUAUGAUUAACAUCUUCAGC----AUAGUC

UUUCGCUCCUAUCUGA---UGA------3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.