Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-...<<<<<......................................................................................... ...................>>>>>...-3' |
| RS008479 (Neurospora crassa) | 5'-CUUGGGCUUCCGUGAUGAUUUA--CAAUCAUAAGCAUAGUUCA-UCUGAAUUA----------UUCAUGAAGACAACUACG--UAUU--UUAUAGUC UUUCGCUCCCAUCUGAUUUUGCCCUUU-3' |
| RS008480 (Yarrowia lipolytica CLIB122) | 5'-CCGCAA-----AUGAUGAUUAA----GAA-UUCGCAUAGUUCA-UCUGACUA-----------UCAAUGAAGAAUUAAUCU--UAGC-----AUGUC UUUCGCUCCUAUCUGA---UUUUUAUC-3' |
| RS008481 (Debaryomyces hansenii) | 5'-GCAGUGAA---AUGAUGAUGAAAAUAUUA-AUUGCAUAGUUCA-ACUGAUAUAU------------AUGAAGAUAAAAAUA-CCAUC--AAAUAGUC UUUCACCCCUAUCUGA---UUCACAAU-3' |
| RS008482 (Kluyveromyces lactis NRRL Y-1140) | 5'-UAUAUCUUA--AUGAUGAUACAUUUCCUUCAGUGCAUAGUUCA-ACUGAUAAGGAUAACUUCCUAUAUGAAGAUAAAAAUU--CAUCGAAUUUAGUC UUUCGCUCCUAUCUGA---AAUCUCUG-3' |
| RS008483 (Saccharomyces cerevisiae (baker's yeast)) | 5'----UGUUA---AUGAUGAUAACC---AAA-GAUGCAUAGUUCA-ACUGAUUGAACAUACUAUCGAAAUGAAGAUAAAAAUUUCCAUCGAAAUUAGUC UUUCGCUCCUAUCUGA-----AC-----3' |
| RS008484 (Saccharomyces cerevisiae (baker's yeast)) | 5'----UGUUA---AUGAUGAUAACC---AAA-GAUGCAUAGUUCA-ACUGAUUGAACAUACUAUCGAAAUGAAGAUAAAAAUUUCCAUCGAAAUUAGUC UUUCGCUCCUAUCUGA-----ACA----3' |
| RS008485 (Zygosaccharomyces rouxii) | 5'-AAGAAGCC---CUGAUGAC------CAACCAAUGCAUAGUUCACACUGAAUGCAA--------UUUGUGAAGAUA-------CCAACGAUUUUAGUC UUUCGCUCCUAUCUGA-CUGGCUUUCU-3' |
| RS008486 (Schizosaccharomyces pombe (fission yeast)) | 5'--------UUCUUUGAUGAUUCC----AAA-AAAGCAUAGUUCA-ACUGAGCAUCGU-------AUGCUGAAACUUU---UU-CCAUC------UGAU UUGCACGUCAGUCUGA------------3' |
| RS008487 (Schizosaccharomyces pombe (fission yeast)) | 5'-AAAGGAUUUCUUUGAUGAUUCC----AAA-AAAGCAUAGUUCA-ACUGAGCAUCGU-------AUGCUGAAACUUU---UU-CCAUC------UGAU UUGCACGUCAGUCUGA---GAUUUCUC-3' |
| RS008488 (Danio rerio (zebrafish)) | 5'-GUGAUGCAA--AUGAUGAC-------------UGCAUAGUUCA-GCAGAAUU-----------UCCAUGUAGAACA-------CAGA--GCAAUGUC UUUCGCUCCUAGCUGA---UGCAUCAC-3' |
| RS008489 (Danio rerio (zebrafish)) | 5'-GUGAUGCAG--AUGAUGAC-------------UGCAUAGUUCA-GCAGAAAC-----------UCCAUGUAGAACA-------CAGA--GCAAUGUC UUUCGCUCCUAGCUGA---UGCAUCAC-3' |
| RS008490 (Mus musculus (house mouse)) | 5'-CCGAUACC---AUGAUGAU--------AA-----CAUAGUUCA-GCAGACUUA----------ACUCUGAUGAACA--------AUC-----AUGUC UUUCGCUCCUAUCUGA---UGUAUCUG-3' |
| RS008491 (Mus musculus (house mouse)) | 5'---GAUACC---AUGAUGAU--------AA-----CAUAGUUCA-GCAGACUUA----------ACUCUGAUGAACA--------AUC-----AUGUC UUUCGCUCCUAUCUGA---UGUAUC---3' |
| RS008492 (Homo sapiens (human)) | 5'-CCGAUACA---AUGAUGAU--------AA-----CAUAGUUCA-GCAGACUA--------------ACGCUGAUGA------GCAAU--AUUAAGUC UUUCGCUCCUAUCUGA---UGUAUCUG-3' |
| RS008493 (Oryza sativa) | 5'--AAGGUCGA--GUGAUGAG-------CAAAAAUGCAUAGUUCA-GAUGAUCAAACCCUA----GUGGUUAUGAUUACUUUG---AAU--AAAUAGUC UUUCGCUCCUAACUGA---CGGCCUU--3' |
| RS008494 (Oryza sativa) | 5'-UGAGGUCGG--AUGAUGAG-------CAA--UUGCAUAGUUCA-AAUGAUUACA---------UUUGUAACUAUUAUGGUU-ACAUC---UAAAGUC UUUCGCUCCUAACUGA---CGACUUUA-3' |
| RS008495 (Oryza sativa (japonica cultivar-group)) | 5'-UGAGGUCGG--AUGAUGAG-------CAA--UUGCAUAGUUCA-AAUGAUUACA---------UUUGUAACUACUAUGAUU-ACAUC---UAAAGUC UUUCGCUCCUAACUGA---CGACUUUA-3' |
| RS008496 (Oryza sativa) | 5'-----GA-----GUGAUGAG-------CAAAAAUGCAUAGUUCA-GAUGAUCAAACCCUA----GUGGUUAUGAUUACUUUG---AAU--AAAUAGUC UUUCGCUC--------------------3' |
| RS008497 (Oryza sativa) | 5'-UGAGGUCGG--AUGAUGAG-------CAA--UUGCAUAGUUCA-AAUGAUUACA---------UUUGUAACUAUUAUGGUU-ACAUC---UAAAGUC UUUCGCUCCUAACUGA---CGACUUUA-3' |
| RS008498 (Zea mays) | 5'-UGAGGUCGG--GUGAUGAG------------UUGCAUAGUUCA-GAUGAUCAACCCUC-----GUGGUUCUGAUUACAUUG---AGU--AAUUAGUC UUUCGCUCCUAUCUGA---CGACCUUA-3' |
| RS008499 (Arabidopsis thaliana (thale cress)) | 5'--AGGGUCAA--GUGAUGAU-------UAAUAAUGCAUAGUUCA-AAUGAUC---------------UCCAUGAUUACUAUU-CAGUA--GCACAGUC UUUCGCUCCUAUCUGA---UGGCCCU--3' |
| RS008500 (Arabidopsis thaliana (thale cress)) | 5'-AGGGAUCAA--GUGAUGAU-------UGAUAACGCAUAGUUCA-GAUGAUAAAU---------UCUAUUAUGAUUAACAUCUUCAGC----AUAGUC UUUCGCUCCUAUCUGA---UGACCCUU-3' |
| RS008501 (Arabidopsis thaliana (thale cress)) | 5'------UCAA--GUGAUGAU-------UGAUAACGCAUAGUUCA-GAUGAUAAAU---------UCUAUUAUGAUUAACAUCUUCAGC----AUAGUC UUUCGCUCCUAUCUGA---UGA------3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

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