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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-<<<<<.................>>>>>......................................................................

.........................................................................................-3'

 
RS002758 (Tetrahymena thermophila)

5'---CCC-----------GAAA--GGGUCCUCCGU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGG---------AUUCCCCAUUUUU-3'

RS002759 (Tetrahymena thermophila)

5'-AACCC-----------GAAA--GGGUCAUCCGU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGG---------AUUCCCCAUUUUU-3'

RS002760 (Tetrahymena thermophila)

5'-AGCCC-----------GAAA--GGG-CAUCUGU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGG---------AUUCCCCAUUUUU-3'

RS002761 (Bigelowiella natans)

5'-GCG-------------UUCA----CGCAUCU-U---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAUCCGAGAUUAG--------GUUCCUUUAUUUA-3'

RS002762 (Entamoeba histolytica)

5'--UCCA----------CUUCGG-UGGAAAUCCCA---------UAAAAUUGGAACAAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCUCAUA-CGAGAAGU---------UAAAAAGUUUUUU-3'

RS002763 (Entosiphon sulcatum)

5'-GUGCU--------CGCUUUGGCAGCACUUACAC---------UAAAAUUGGAAUGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCACGGUCCCUGGGCAA-GGAUGACACACAAGUU-CGUGAAGC---------GUUCCAUAUUUUU-3'

RS002764 (Crithidia fasciculata)

5'-GCCCC-----------UUCGG-GGGACAUCCAC----------CACC-UGGAAAUUCAAUAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002765 (Crithidia fasciculata)

5'-GCCCC-----------UUCGG-GGGACAUCCAC----------CACC-UGGAAAUUCAAUAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002766 (Leishmania mexicana)

5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002767 (Leishmania tarentolae)

5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002768 (Leptomonas collosoma)

5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AACC-UGGAACUUCAACAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002769 (Leptomonas seymouri)

5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AAUC-UGGAAAUUCAACAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002770 (Phytomonas sp.)

5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AACC-UGGAACUUCAACAGACAAGAUU---------------------------

-----------------------AGCAUUCUCCCUGCGCAA-GGCCGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002771 (Trypanosoma brucei)

5'-GCCCU------------UCG--GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002772 (Trypanosoma brucei)

5'-GCCCU------------UCG--GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU---------------------------

-----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3'

RS002773 (Aspergillus niger)

5'-GUCCGUUGUAACAGCCUU----UGGACAUAUGCUCGACAUUGCUAAAUUGGAACGAUA-CAGAGACGAU----------------------------

-----------------------AGCAUGUCCCCUGCGCAA-GGAUGACGUUACAAAU-CGAGAUAUUC-------GUUUUAGGCUUUU-3'

RS002774 (Saccharomyces cerevisiae (baker's yeast))

5'-GUUCGCGAAGUAACCCUUCG--UGGACAUUUGG---------UCAAUUUGAAACAAUA-CAGAGAUGAUC---------------------------

-----------------------AGCAGUUCCCCUGCAUAA-GGAUGAACCGUUUUAC-AAAGAGAU---------UUAUUUCGUUUUU-3'

RS002775 (Schizosaccharomyces pombe (fission yeast))

5'-GAUCU------------UC---GGAUCACUUUG--------GUCAAAUUGAAACGAUA-CAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCG

AGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAA-GGAUGACACUGCGACAUUGAGAGA----------AAACCCAUUUUUU-3'

RS002776 (Antonospora locustae)

5'-UGCAG-----------UUUG--CUGCGCUAUUA------------GUUUGGAACAACA-CUGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGACGGCAUCUUUCUU-UGAGAGGUGUGCUGGGCUCGCCCAGCUUUU-3'

RS002777 (Drosophila melanogaster (fruit fly))

5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3'

RS002778 (Drosophila melanogaster (fruit fly))

5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3'

RS002779 (Drosophila melanogaster (fruit fly))

5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3'

RS002780 (Drosophila melanogaster (fruit fly))

5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCAGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3'

RS002781 (Xenopus tropicalis (western clawed frog))

5'-GUGCU--------UGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3'

RS002782 (Mus musculus (house mouse))

5'-GUGCU--------CGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUUU--------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3'

RS002783 (Rattus norvegicus (Norway rat))

5'-GUGCC--------UGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUU--3'

RS002784 (Homo sapiens (human))

5'-GUGCU--------UGCUUUGGUAGCACAUGUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAU----------------------------

-----------------------AGCACAGUCCCCGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3'

RS002785 (Homo sapiens (human))

5'-GUGCU--------CGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3'

RS002786 (Strongylocentrotus purpuratus)

5'-GUGUU--------AGCUUCGGCAACACAUCUAU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCAUAUUUUU-3'

RS002787 (Strongylocentrotus purpuratus)

5'-GUGUU--------AGCUUCGGCAACACAUCUAU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCAUAUUUUU-3'

RS002788 (Ascaris lumbricoides (common roundworm))

5'-GUUCA-----------UUCCGAUGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAAAUUUUC-3'

RS002789 (Ascaris lumbricoides (common roundworm))

5'-GUUCA-----------UUCCGAUGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAGUU-CGUGAAGC---------GUUCCAAAUUUUU-3'

RS002790 (Ascaris lumbricoides (common roundworm))

5'-GUUCA-----------UUCCGAUGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAAAUUUUU-3'

RS002791 (Caenorhabditis elegans)

5'-GUUCU-----------UCCG--AGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAAAUUUUU-3'

RS002792 (Taenia solium (pork tapeworm))

5'-GUAUC---------UCCUCGGAGGUACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCAUAUUUUC-3'

RS002793 (Schistosoma mansoni)

5'-GUACU--------CGCUUCGGCGGUACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAUUCGUGAAGC---------GUUCCAUAUUUU--3'

RS002794 (Chlamydomonas reinhardtii)

5'-GUGCU------------UC---GGCACAACUGU---------UAAAAUUGGAAAAAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUUCCAAAUUUU-3'

RS002795 (Triticum aestivum (bread wheat))

5'-G-CCC----------CUUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002796 (Zea mays)

5'-GUCUC-----------UUCG--GAGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002797 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002798 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002799 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AACAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002800 (Solanum tuberosum (potato))

5'-CUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUU--3'

RS002801 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002802 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002803 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002804 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002805 (Solanum tuberosum (potato))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002806 (Solanum lycopersicum)

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAAUUUU-3'

RS002807 (Vicia faba (fava bean))

5'----------------CUUCG--GGGACAUCCGA---------UAAAAUUGGAACGACA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUU--3'

RS002808 (Arabidopsis thaliana (thale cress))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002809 (Arabidopsis thaliana (thale cress))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'

RS002810 (Arabidopsis thaliana (thale cress))

5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU---------------------------

-----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUCCAAAUUUUU-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.