Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-<<<<<.................>>>>>...................................................................... .........................................................................................-3' |
| RS002758 (Tetrahymena thermophila) | 5'---CCC-----------GAAA--GGGUCCUCCGU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGG---------AUUCCCCAUUUUU-3' |
| RS002759 (Tetrahymena thermophila) | 5'-AACCC-----------GAAA--GGGUCAUCCGU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGG---------AUUCCCCAUUUUU-3' |
| RS002760 (Tetrahymena thermophila) | 5'-AGCCC-----------GAAA--GGG-CAUCUGU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCGAAGGAUGACACGCUCAAAGCGAGAAGG---------AUUCCCCAUUUUU-3' |
| RS002761 (Bigelowiella natans) | 5'-GCG-------------UUCA----CGCAUCU-U---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAUCCGAGAUUAG--------GUUCCUUUAUUUA-3' |
| RS002762 (Entamoeba histolytica) | 5'--UCCA----------CUUCGG-UGGAAAUCCCA---------UAAAAUUGGAACAAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCUCAUA-CGAGAAGU---------UAAAAAGUUUUUU-3' |
| RS002763 (Entosiphon sulcatum) | 5'-GUGCU--------CGCUUUGGCAGCACUUACAC---------UAAAAUUGGAAUGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCACGGUCCCUGGGCAA-GGAUGACACACAAGUU-CGUGAAGC---------GUUCCAUAUUUUU-3' |
| RS002764 (Crithidia fasciculata) | 5'-GCCCC-----------UUCGG-GGGACAUCCAC----------CACC-UGGAAAUUCAAUAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002765 (Crithidia fasciculata) | 5'-GCCCC-----------UUCGG-GGGACAUCCAC----------CACC-UGGAAAUUCAAUAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002766 (Leishmania mexicana) | 5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002767 (Leishmania tarentolae) | 5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002768 (Leptomonas collosoma) | 5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AACC-UGGAACUUCAACAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002769 (Leptomonas seymouri) | 5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AAUC-UGGAAAUUCAACAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002770 (Phytomonas sp.) | 5'-GCCCC-----------UUCGG-GGGACAUCCAC----------AACC-UGGAACUUCAACAGACAAGAUU--------------------------- -----------------------AGCAUUCUCCCUGCGCAA-GGCCGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002771 (Trypanosoma brucei) | 5'-GCCCU------------UCG--GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002772 (Trypanosoma brucei) | 5'-GCCCU------------UCG--GGGACAUCCAC----------AAAC-UGGAAAUUCAACAGAGAAGAUU--------------------------- -----------------------AGCACUCUCCCUGCGCAA-GGCUGAUGUCAAUCUU-CGAGAGAU---------AUAGC----UUUU-3' |
| RS002773 (Aspergillus niger) | 5'-GUCCGUUGUAACAGCCUU----UGGACAUAUGCUCGACAUUGCUAAAUUGGAACGAUA-CAGAGACGAU---------------------------- -----------------------AGCAUGUCCCCUGCGCAA-GGAUGACGUUACAAAU-CGAGAUAUUC-------GUUUUAGGCUUUU-3' |
| RS002774 (Saccharomyces cerevisiae (baker's yeast)) | 5'-GUUCGCGAAGUAACCCUUCG--UGGACAUUUGG---------UCAAUUUGAAACAAUA-CAGAGAUGAUC--------------------------- -----------------------AGCAGUUCCCCUGCAUAA-GGAUGAACCGUUUUAC-AAAGAGAU---------UUAUUUCGUUUUU-3' |
| RS002775 (Schizosaccharomyces pombe (fission yeast)) | 5'-GAUCU------------UC---GGAUCACUUUG--------GUCAAAUUGAAACGAUA-CAGAGAAGAUUGUAAGUAACAAUAUUUACCAAGGUUCG AGUCAUACUAACUCGUUGUUUAGAGCAUGGCCCCUGCACAA-GGAUGACACUGCGACAUUGAGAGA----------AAACCCAUUUUUU-3' |
| RS002776 (Antonospora locustae) | 5'-UGCAG-----------UUUG--CUGCGCUAUUA------------GUUUGGAACAACA-CUGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGACGGCAUCUUUCUU-UGAGAGGUGUGCUGGGCUCGCCCAGCUUUU-3' |
| RS002777 (Drosophila melanogaster (fruit fly)) | 5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3' |
| RS002778 (Drosophila melanogaster (fruit fly)) | 5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3' |
| RS002779 (Drosophila melanogaster (fruit fly)) | 5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3' |
| RS002780 (Drosophila melanogaster (fruit fly)) | 5'-GUUCU--------UGCUUCGGCAGAACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCAGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCACAUUUUU-3' |
| RS002781 (Xenopus tropicalis (western clawed frog)) | 5'-GUGCU--------UGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3' |
| RS002782 (Mus musculus (house mouse)) | 5'-GUGCU--------CGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUUU-------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3' |
| RS002783 (Rattus norvegicus (Norway rat)) | 5'-GUGCC--------UGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUU--3' |
| RS002784 (Homo sapiens (human)) | 5'-GUGCU--------UGCUUUGGUAGCACAUGUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAU---------------------------- -----------------------AGCACAGUCCCCGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3' |
| RS002785 (Homo sapiens (human)) | 5'-GUGCU--------CGCUUCGGCAGCACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAUAUUUUU-3' |
| RS002786 (Strongylocentrotus purpuratus) | 5'-GUGUU--------AGCUUCGGCAACACAUCUAU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCAUAUUUUU-3' |
| RS002787 (Strongylocentrotus purpuratus) | 5'-GUGUU--------AGCUUCGGCAACACAUCUAU---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCAUAUUUUU-3' |
| RS002788 (Ascaris lumbricoides (common roundworm)) | 5'-GUUCA-----------UUCCGAUGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAAAUUUUC-3' |
| RS002789 (Ascaris lumbricoides (common roundworm)) | 5'-GUUCA-----------UUCCGAUGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAGUU-CGUGAAGC---------GUUCCAAAUUUUU-3' |
| RS002790 (Ascaris lumbricoides (common roundworm)) | 5'-GUUCA-----------UUCCGAUGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAAAUUUUU-3' |
| RS002791 (Caenorhabditis elegans) | 5'-GUUCU-----------UCCG--AGAACAUAUAC---------UAAAAUUGGAACAAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAUU-CGUGAAGC---------GUUCCAAAUUUUU-3' |
| RS002792 (Taenia solium (pork tapeworm)) | 5'-GUAUC---------UCCUCGGAGGUACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAU-CGUGAAGC---------GUUCCAUAUUUUC-3' |
| RS002793 (Schistosoma mansoni) | 5'-GUACU--------CGCUUCGGCGGUACAUAUAC---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAAAAUUCGUGAAGC---------GUUCCAUAUUUU--3' |
| RS002794 (Chlamydomonas reinhardtii) | 5'-GUGCU------------UC---GGCACAACUGU---------UAAAAUUGGAAAAAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUUCCAAAUUUU-3' |
| RS002795 (Triticum aestivum (bread wheat)) | 5'-G-CCC----------CUUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002796 (Zea mays) | 5'-GUCUC-----------UUCG--GAGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002797 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002798 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002799 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AACAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002800 (Solanum tuberosum (potato)) | 5'-CUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUU--3' |
| RS002801 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002802 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002803 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002804 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002805 (Solanum tuberosum (potato)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002806 (Solanum lycopersicum) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAAUUUU-3' |
| RS002807 (Vicia faba (fava bean)) | 5'----------------CUUCG--GGGACAUCCGA---------UAAAAUUGGAACGACA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCACAAAUCGAGAAAU---------GGUCCAAAUUUU--3' |
| RS002808 (Arabidopsis thaliana (thale cress)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002809 (Arabidopsis thaliana (thale cress)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
| RS002810 (Arabidopsis thaliana (thale cress)) | 5'-GUCCC-----------UUCG--GGGACAUCCGA---------UAAAAUUGGAACGAUA-CAGAGAAGAUU--------------------------- -----------------------AGCAUGGCCCCUGCGCAA-GGAUGACACGCAUAAAUCGAGAAAU---------GGUCCAAAUUUUU-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

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