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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-.........<<<<..<<....<<<<<<.<<<<<<<<.....>>>>>>>>>>>...>>>>>>>>>.................................

.......<<<<<<<<.....>>>>>>>>.<<<<<<<<.....>>>>>>>>...................-3'

 
RS002502 (Escherichia coli K12)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-GUUCUGGUGAA---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCAUGGUAGCAA------AGCUACCUUUUUUCACUUCCUGUACA-3'

RS002503 (Escherichia coli)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-GUUCUGGUGAA---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCAUGGUAGCAA------AGCUACCUUUUUUCACUUCCUGUACA-3'

RS002504 (Escherichia coli)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-GUUCUGGUGAA---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCAUGGUAGCAA------AGCUACCUUUUUUCACUUCCUGUACA-3'

RS002505 (Escherichia coli CFT073)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-GUUCUGGUGAA---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCAUGGUAGCAA------AGCUACCUUUUUUCACUUCCUGUACA-3'

RS002506 (Erwinia carotovora subsp. atroseptica SCRI1043)

5'-ACUUC-CUGGGCCGGAACGAAAAGUGCGGAGGGG------UGACCUGAGGUG---CUUUUGGCUUGUG--GUUGUGAUG--------UUGUGUUUGC

UAUUUUUUUGUCUGCUUCUUGCAGAUGU-GGUAGCGA------GUCUACCCUAUUCACUUCCUGUACAU-3'

RS002507 (Photorhabdus luminescens subsp. laumondii TTO1)

5'-ACUUC-CUAAGCCGGAACGAAAAGUGA-AUCAGCUUA----ACGCUAUGAAA---CUUUUGGCUUUGUG-GUUGUGAUG--------UUGUGUUUGC

AA----GUUGUCUGGGAAA-CCGGACCCU-GUAGCUC-----AAGCUACUGUUUUUUCACUUCCUGUAC-3'

RS002508 (Salmonella enterica subsp. enterica serovar Typhi)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-GUUCUGAUGGG---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCACGGUAGCGA------GACUACCCUUUUUCACUUCCUGUACA-3'

RS002509 (Salmonella typhimurium LT2)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-GUUCUGAUGGG---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCACGGUAGCGA------GACUACCCUUUUUCACUUCCUGUACA-3'

RS002510 (Salmonella enterica subsp. enterica serovar Typhi Ty2)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-GUUCUGAUGGG---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCACGGUAGCGA------GACUACCCUUUUUCACUUCCUGUACA-3'

RS002511 (Shigella flexneri 2a str. 2457T)

5'-ACUUC-CUGAGCCGGAACGAAAAGUUUUAUCGGAAUGCGU-AUUCUGGUGAA---CUUUUGGCUUACG--GUUGUGAUGUUGUGUUGUUGUGUUUGC

AA----UUGGUCUGCGAU--UCAGACCAUGGUAGCAA------AGCUACCUUUUUUCACUUCCUGUACA-3'

RS002512 (Yersinia pestis KIM)

5'-ACUUCCCCUAGCCGGAACGAAAAGUAGGUUUGGUAUCCCAGGUACUGAAAUG---CUUUUGGCUUUGUG-GUGGUGAUG--------UUGUGUUUGC

AA----AUGGUCUGGUAUG-CCAGA-CAUAGUAGCUA------AGCUACUGCUUUUUUUCACUUCCUGU-3'

RS002513 (Yersinia pestis CO92)

5'-ACUUCCCCUAGCCGGAACGAAAAGUAGGUUUGGUAUCCCAGGUACUGAAAUG---CUUUUGGCUUUGUG-GUGGUGAUG--------UUGUGUUUGC

AA----AUGGUCUGGUAUG-CCAGA-CAUAGUAGCUA------AGCUACUGCUUUUUUUCACUUCCUGU-3'

RS002514 (Yersinia pestis biovar Microtus str. 91001)

5'-ACUUCCCCUAGCCGGAACGAAAAGUAGGUUUGGUAUCCCAGGUACUGAAAUG---CUUUUGGCUUUGUG-GUGGUGAUG--------UUGUGUUUGC

AA----AUGGUCUGGUAUG-CCAGA-CAUAGUAGCUA------AGCUACUGCUUUUUUUCACUUCCUGU-3'

RS002515 (Haemophilus influenzae Rd KW20)

5'-UCCUU-ACAAUACAACCAUACUUAAUG-AUUGGUAAUUCC-UUACUAGUUAA---UGAGUUUCAGACUUAAGUAUGAUG--------UUGUGUUUGC

AUA----UAGUUCGGGAAA-CCGAACUUGAGUAACAA-------UUUGUUACUCAUUUACUUCCUGUAU-3'

RS002516 (Pasteurella multocida subsp. multocida str. Pm70)

5'-CCCUCUAAAAUGCGCGCAUACUUAAUG-AUUGGUAAUUCC-UUACUGGUUAAGAGUUUCGGACUUAAG----UAUGAUG--------UUGUGUUUGC

AU----AUUGUUUGGGAAA-CCAAACAG-AGUAACUUAUCUUAAGUUACUUAUUUUCACUUCCUGUAUA-3'

RS002517 (Vibrio cholerae O1 biovar eltor str. N16961)

5'-CGCAACGGCGGCCUGAACGGCUUGAUU-UCCU-------------UGUAAAU---CAAUAGGCUUAGUU-GUUGCGAUG--------UUGUGUUUGC

A------AACUCGAAA----UUCGAGUUAGGUAGUU--------UCUACCACCCGUUUUGUGCAGUUAU-3'

RS002518 (Vibrio vulnificus CMCP6)

5'-CGCAACGCUAGCCUGAACGGCUUGAUU-UCUU-------------UGUAAAU---CAAUUGGCUUAGUU-GUUGCGAUG--------UUGUGUUUGC

A------AACUCGUAUU----UCGAGUUAGGUAGAU-------UUCUACCGUAGUGUUUUGUCCAACUC-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.