Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-...<<<<<<<.<<<..........AAAA....BBBB....CCCC....>>>>>>>>>>......................................b bbb.....aaaa...........cccc.-3' |
| RS005366 (Shewanella violacea) | 5'-AACUGUCGUC-UGUC---GAGUAUCCU---ACCGGGCUUUUC------ACAGAUGACC---A--UU---AACUAUU---GAGGAGUGC-AUAGUGGC CCGUAUCGCUGGCAUUAACAUUCCUGAU-3' |
| RS005367 (Shewanella oneidensis MR-1) | 5'-AUCUGUCAAC-UGUC---GAGUAUCCUUU---CGGGCUUUUC------GCAGUUGGCC---U--UU---AACUUA-----AGGAGUGC-AUAGUGGC CCGUAUCGCUGGCAUUAACAUUCCUGAU-3' |
| RS005368 (Buchnera aphidicola str. Sg (Schizaphis graminum)) | 5'-UUAUCGAAAG-UUUAUUAAUAUAUUUU----AAGAAAUUUAUUAGAU-UAAUAAUUUUC--A--UC---AAUUUAA---AAGGUUUUAUAAAAUGGC UCGUAUUGCAGGUAUUAAUAUUCCUGAA-3' |
| RS005369 (Buchnera aphidicola str. Bp (Baizongia pistaciae)) | 5'-AGGUUUGUAU-UAAAAGAGAAUAUUUUUUUAUUG---UAUAAAAUAU-AAAAUAUAAAU--A--AC---GACAUUU--AUAGGGGUUU-AUAGUGGC UCGUAUUGCAGGUAUUAACAUUGCUAAU-3' |
| RS005370 (Escherichia coli CFT073) | 5'-GUCUGUGCGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCAGCAU-GGAACGUACAU--A--UU---AAAUAGU----AGGAGUGC-AUAGUGGC CCGUAUAGCAGGCAUUAACAUUCCUGAU-3' |
| RS005371 (Erwinia carotovora subsp. atroseptica SCRI1043) | 5'-UAGCUGCAAC-AUUAUUUGAGUAUCCUGAAAACGGGCUUUUCAGAAU-GGUGUUGCCGU--A--UA---AAAUUGU----AGGAGUGC-AUAGUGGC CCGUAUAGCAGGCAUUAACAUUCCUGAU-3' |
| RS005372 (Photorhabdus luminescens subsp. laumondii TTO1) | 5'-UCACAGUAAC-ACUGUUUGAGUAUCCUGAAAACGGGCUUUUCAGAAU-GGUGUUGCGGUAAA--UA---AAUAAUU---UAGGAGUGC-AUAGUGGC CCGUAUAGCAGGCAUUAACAUUCCUGAU-3' |
| RS005373 (Salmonella enterica subsp. enterica serovar Typhi Ty2) | 5'-GUCUGUACGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCAGCAU-GGUACGUACAU--A--UU---AAAUAGU----AGGAGUGC-AUAGUGGC CCGUAUAGCAGGCAUUAACAUUCCUGAU-3' |
| RS005374 (Shigella flexneri 2a str. 2457T) | 5'-GUCUGUACGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCAGCAU-GGAACGUACAU--A--UU---AAAUAGU----AGGAGUGC-AUAGUGGC CCGUAUAGCAGGCAUUAACAUUCCUGAU-3' |
| RS005375 (Yersinia pestis CO92) | 5'-UGACUGCAAU-GCUAUUUGAGUAUCCUGAAAACGGGCUUUUCAGAAU-GGUAUUGCUGU--A--UA---AAAUAGU----AGGAGUGC-AUAGUGGC CCGUAUAGCAGGCAUUAACAUUCCUGAU-3' |
| RS005376 (Haemophilus ducreyi 35000HP) | 5'-GUCCUGAUAU-ACUGUUUGAGUAUCCUGA-AACGGGCUUUUCAAGAUCAGUAUAUCAUA--AACUU---AAAUAAU----AGGAGUGC-AUAGUGGC CCGUAUUGCAGGCAUUAACAUUCCUGAU-3' |
| RS005377 (Haemophilus influenzae Rd KW20) | 5'-UCCUUGAUAU-UCUGUUUGAGUAUCCUGAAAACGGGCUUUUCAAGAUCAGAAUAUCAA---A--UU---AAUUAAAAUAUAGGAGUGC-AUAGUGGC CCGUAUUGCAGGCAUUAACAUUCCUGAU-3' |
| RS005378 (Pasteurella multocida subsp. multocida str. Pm70) | 5'-UCCUUGACAC-UUUGUUUGAGUAUCCUGAAAACGGGCUUUUCAAGAUCAAAGUGUCAAC--U--UAGUUAAAUAAU----AGGAGUGC-AUAGUGGC CCGUAUUGCAGGCAUUAACAUUCCUGAU-3' |
| RS005379 (Photobacterium profundum) | 5'-AGAAUUGUAC-CACCACUGCGUAUCCU--AAACGGGCUCUGCA-----GUGGUUAUUCU--U--GU---AAAGUAC---UAGGAGUGA-AUAGUGGC CCGUAUUGCAGGCAUUAACAUUCCUGAU-3' |
| RS005380 (Vibrio cholerae O1 biovar eltor str. N16961) | 5'-AAGAAGUAGUAUACCGCAACGUAUCCUC--GACGGGCUUUGUUGCGG-GUAAUUCUUUG--A--UG---AAAGUAC---UAGGAGUGC-AUAGUGGC CCGUAUAGCAGGCAUUAACAUUCCUGAU-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

RSS Feed