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Database

Multiple Alignment

IDsAligned Sequences
Consensus structure

5'-...<<<<<<<.<<<..........AAAA....BBBB....CCCC....>>>>>>>>>>......................................b

bbb.....aaaa...........cccc.-3'

 
RS005366 (Shewanella violacea)

5'-AACUGUCGUC-UGUC---GAGUAUCCU---ACCGGGCUUUUC------ACAGAUGACC---A--UU---AACUAUU---GAGGAGUGC-AUAGUGGC

CCGUAUCGCUGGCAUUAACAUUCCUGAU-3'

RS005367 (Shewanella oneidensis MR-1)

5'-AUCUGUCAAC-UGUC---GAGUAUCCUUU---CGGGCUUUUC------GCAGUUGGCC---U--UU---AACUUA-----AGGAGUGC-AUAGUGGC

CCGUAUCGCUGGCAUUAACAUUCCUGAU-3'

RS005368 (Buchnera aphidicola str. Sg (Schizaphis graminum))

5'-UUAUCGAAAG-UUUAUUAAUAUAUUUU----AAGAAAUUUAUUAGAU-UAAUAAUUUUC--A--UC---AAUUUAA---AAGGUUUUAUAAAAUGGC

UCGUAUUGCAGGUAUUAAUAUUCCUGAA-3'

RS005369 (Buchnera aphidicola str. Bp (Baizongia pistaciae))

5'-AGGUUUGUAU-UAAAAGAGAAUAUUUUUUUAUUG---UAUAAAAUAU-AAAAUAUAAAU--A--AC---GACAUUU--AUAGGGGUUU-AUAGUGGC

UCGUAUUGCAGGUAUUAACAUUGCUAAU-3'

RS005370 (Escherichia coli CFT073)

5'-GUCUGUGCGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCAGCAU-GGAACGUACAU--A--UU---AAAUAGU----AGGAGUGC-AUAGUGGC

CCGUAUAGCAGGCAUUAACAUUCCUGAU-3'

RS005371 (Erwinia carotovora subsp. atroseptica SCRI1043)

5'-UAGCUGCAAC-AUUAUUUGAGUAUCCUGAAAACGGGCUUUUCAGAAU-GGUGUUGCCGU--A--UA---AAAUUGU----AGGAGUGC-AUAGUGGC

CCGUAUAGCAGGCAUUAACAUUCCUGAU-3'

RS005372 (Photorhabdus luminescens subsp. laumondii TTO1)

5'-UCACAGUAAC-ACUGUUUGAGUAUCCUGAAAACGGGCUUUUCAGAAU-GGUGUUGCGGUAAA--UA---AAUAAUU---UAGGAGUGC-AUAGUGGC

CCGUAUAGCAGGCAUUAACAUUCCUGAU-3'

RS005373 (Salmonella enterica subsp. enterica serovar Typhi Ty2)

5'-GUCUGUACGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCAGCAU-GGUACGUACAU--A--UU---AAAUAGU----AGGAGUGC-AUAGUGGC

CCGUAUAGCAGGCAUUAACAUUCCUGAU-3'

RS005374 (Shigella flexneri 2a str. 2457T)

5'-GUCUGUACGUUUCCAUUUGAGUAUCCUGAAAACGGGCUUUUCAGCAU-GGAACGUACAU--A--UU---AAAUAGU----AGGAGUGC-AUAGUGGC

CCGUAUAGCAGGCAUUAACAUUCCUGAU-3'

RS005375 (Yersinia pestis CO92)

5'-UGACUGCAAU-GCUAUUUGAGUAUCCUGAAAACGGGCUUUUCAGAAU-GGUAUUGCUGU--A--UA---AAAUAGU----AGGAGUGC-AUAGUGGC

CCGUAUAGCAGGCAUUAACAUUCCUGAU-3'

RS005376 (Haemophilus ducreyi 35000HP)

5'-GUCCUGAUAU-ACUGUUUGAGUAUCCUGA-AACGGGCUUUUCAAGAUCAGUAUAUCAUA--AACUU---AAAUAAU----AGGAGUGC-AUAGUGGC

CCGUAUUGCAGGCAUUAACAUUCCUGAU-3'

RS005377 (Haemophilus influenzae Rd KW20)

5'-UCCUUGAUAU-UCUGUUUGAGUAUCCUGAAAACGGGCUUUUCAAGAUCAGAAUAUCAA---A--UU---AAUUAAAAUAUAGGAGUGC-AUAGUGGC

CCGUAUUGCAGGCAUUAACAUUCCUGAU-3'

RS005378 (Pasteurella multocida subsp. multocida str. Pm70)

5'-UCCUUGACAC-UUUGUUUGAGUAUCCUGAAAACGGGCUUUUCAAGAUCAAAGUGUCAAC--U--UAGUUAAAUAAU----AGGAGUGC-AUAGUGGC

CCGUAUUGCAGGCAUUAACAUUCCUGAU-3'

RS005379 (Photobacterium profundum)

5'-AGAAUUGUAC-CACCACUGCGUAUCCU--AAACGGGCUCUGCA-----GUGGUUAUUCU--U--GU---AAAGUAC---UAGGAGUGA-AUAGUGGC

CCGUAUUGCAGGCAUUAACAUUCCUGAU-3'

RS005380 (Vibrio cholerae O1 biovar eltor str. N16961)

5'-AAGAAGUAGUAUACCGCAACGUAUCCUC--GACGGGCUUUGUUGCGG-GUAAUUCUUUG--A--UG---AAAGUAC---UAGGAGUGC-AUAGUGGC

CCGUAUAGCAGGCAUUAACAUUCCUGAU-3'


References:

  1. Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.