Database
Multiple Alignment
| IDs | Aligned Sequences |
|---|---|
| Consensus structure | 5'-.<<<<<<<<<<.<<<<.<<<...................<<<<<<<<.<<<.....................<<<.<<<<<.......<<<<<<<.. ........<<....<<<<<..........................................>>>>>....>>........>>>>>>>...>>>>>...>> >........................>>>.>>>>>.>>>..................>>>>>>>...>>>>>>>>>>..-3' |
| RS002261 (Aquifex aeolicus VF5) | 5'-UAAGGUCUGCC-CUGUUCGUGGUGCGGGGGUU-------GUCAAUGGGGCCUACACCGUGGGUGUAA-----GGGAAGUCGACU----UCGGGAA-- --------------CU-------------------------------CCGGA------------AG-----------GA-UUCCCGA--GGGACU--UCC CAC--CUUA---AAG---CUCUG-AGGC-CCA-C-GGCA-----CUUCCUGCACU-GCGGCAG---GGCGGACACUCU-3' |
| RS002262 (Synechococcus sp. WH 8102) | 5'-CCUGAACUGCU-GUGUUGGUGACGGCCUUUUCUAG----UGCUCUGA--UCUGACUCUCUUUCGACUU----GGGGAGACUGUC----GUGACGGUG C-C-----GU-AAACCGGC----------------------------CCUGU--------AGCCGGAA--AC---G--AAUCCCCAC-UUUGUUU--CCC CUU--CUGG---UUC---UUCCA--GG--UC-GA-CCAC-----U--GGGGCUCGCACGGCAC---GGUGGUUCACCC-3' |
| RS002263 (Synechococcus elongatus PCC 7942) | 5'-AUCUGGCUGCG-ACGU-UGGUGACUGCCAACAAUG----UUUUUUGA--UCUAUACCUUUCGAAGUU-----GGGCGCUCUCGCAG--AGCCGACGG C-A-----GU-AGACCGAG----------------------------CUUGA---------CUCGGAA--AC---UUAAUGUUGGCC--GCAAGC--UCC CCC--CUGG---UUC---UCCCA--GG--UCG---AAAU-------CUGAGGUAAAACGGCGU---CGCGGUUAGAUC-3' |
| RS002264 (Prochlorococcus marinus str. MIT 9313) | 5'-CUUGAACUGCU-GUGU-UGGUGACGGCCUUUUUCUAG--UGCUCUGA-UCUGACUCUCUUUCGAUUU-----GGGGAGGCUGUC----GUGAAGGUG A-C-----GU-AGACCGGA----------------------------CUUGC--------UUCCGGAA--AC---G--AAGCCCCAC-UUUGCUU--CCC CUU--CUGG---UUC---UUCC---AGG-UCG-A-ACAC-----U--GGGGCUCGCACGGCAU---GGCGGUUCACCU-3' |
| RS002265 (Prochlorococcus marinus subsp. marinus str. CCMP1375) | 5'-AGAGAACUGUU-UUGUUGGUGAUGACCUUUUAAGU----GC-UCUG--AUCUGACUCUUUUUCGACUU----GAGGAGACUGUU----GUUAUCGUG AA------GU-AAACCAGU----------------------------CAUGC--------AACUGGAA--AU---GGAUC--AUUAC-UUUGACU--CCU CUU--CUGG-CUUAU-----CCA--GGU--C-GAACGCU---------UAGGUCACACGGCAA---AAUGGUUCUAUA-3' |
| RS002266 (Prochlorococcus marinus subsp. pastoris str. CCMP1986) | 5'-UACAUACUGGA-UCUUUGGUCAAGUUCUUCUUUAUG---UGCUCUGA-UCUGACUCUUUUUCGACUU-----GAGGAGACUGUC----GUGAUGUAG A-C-----GU-AAACCAAU----------------------------CCUGU--------AAUUGGAA--AC---G-AAAGCC-CAC-UUUGACU--CCU CUU--CUGG--CUUU----UCC---AGG-UCG-AUGCAU-------CAGAGAACUGGCGGGGA---UUCGGUGUUACC-3' |
| RS002267 (Bacillus subtilis subsp. subtilis str. 168) | 5'-AAGAAGCUACU-UUGUGCGU--AUUGUUAAUU-------AAGUUUUA-ACCUUUAAGCUGUAAUA-------GGGAGUUUUAUAUC---GAAGCCGG AAUG----UC-AUGCCUCC----------------------------AUUGC---------AGAGGAC--GA--CAGGAACGUUUC--UGCAAAC--ACC CAC--UUUG---AGG----AGUGGUGGUUUAAAA-CUU------UCUUACUUGCAUACGGCAA-GACGUAGCGAAAGC-3' |
| RS002268 (Bacillus subtilis subsp. subtilis str. 168) | 5'-AAAGUCCUGAU-GUGUUAGUUGUACACCUA---------GUUU-UGA--CCGAACAUUUUUUUGAUUU----GGGAGCCCGCAUU---UUUAAAUGG CGU-----AC-AUGCCUCUUUUCA-----------------------UUCGG------UAAAGAGGAC--UU---ACAAGAUUUAAA-AGAGGGC--ACC CAC--CUGC--UGAG----AGCG--GGU-UCA-A-AAC---AAAGGAAAGCUGCA-ACGGCAC--UAUUGGGACUUUA-3' |
| RS002269 (Bacillus phage phBC6A52) | 5'-AAAUUCCUACG-GUGUACGUAGCUUAUGCAUG-------UCU--UAA-ACCAAUAAGUUUAAUAU-------GGAAGUUCAAUAUU--UAAAUGUAG CUA-----AC-AUGCCAUC----------------------------UUUUU-------AAGAAGGAA--GU---UACAAACAUUUG-UGAGAGC--AUC CAC--CUGU---GAG----AGCA--GGU-UUAU--GGAC-----AUCUAGAGAGA-ACGGCAU--AUGUGGGGCUAUA-3' |
| RS002270 (Bacillus thuringiensis serovar konkukian str. 97-27) | 5'-CACAUCCUGCG-GUGUACGUAACUUAUUUA---------UGUCUAAA-ACCGAUGUUAGUUAUAC-------GGAAGCUCAAUAUUU-AGUGACCAU C-A-----UC-AAGCCUUC----------------------------CUUGU---------GGAGGAA--GA---UGUACGGUAACUGUGAGGGC--AUC CAC--CUGC--GAGU----AGCG--GGUUUUUGG-ACAU-----U---UACGAGGAGCGGCAC--GUGCGGGG-GUCU-3' |
| RS002271 (Bacillus cereus ATCC 10987) | 5'-UACAUCCUGCG-GUGUACGUAACUUAUUUA---------UGUCUAAA-ACCGAUGUUAGUUAUAC-------GGAAGCUCAAUAUU--UAGCGACCA UCA-----UC-AAGCCUUC----------------------------CUUGU---------GGAGGAA--GA--UGUACGGUAACUG-UGAGGGC--AUC CAC--CUGC--GAGU----AGCG--GGUUUUUGG-ACAU-----U---UACGAGGAGCGGCAC--GUGCGGGG-GUCU-3' |
| RS002272 (Bacillus thuringiensis serovar konkukian str. 97-27) | 5'-AAAUUCCUACG-GUGUACGUAGCUUAUGCAUG-------UCU--UAA-ACCAAUAAGUUUAAUAU-------GGAAGUUCAAUAUU--UAAAUGUAG CUA-----AC-AUGCCAUC----------------------------UUUUU-------AAGAAGGAA--GU---UACAAACAUUUG-UGAGAGC--AUC CAC--CUGU---GAG----AGCA--GGU-UUAU--GGAC-----AUCUAGAGAGA-ACGGCAU--AUGUGGGGCUAUA-3' |
| RS002273 (Bacillus cereus ATCC 10987) | 5'-AAAUUCCUACG-GUGUACGUAGCUUAUGCAUG-------UCU--UAA-ACCAAUAAGUUUAAUAU-------GGAAGUUCAAUAUU--UAAAUGUAG CUA-----AC-AUGCCAUC----------------------------UUUUU-------AAGAAGGAA--GU---UACAAACAUUUG-UGAGAGC--AUC CAC--CUGU---GAG----AGCA--GGU-UUAU--GGAC-----AUCUAGAGAGA-ACGGCAU--AUGUGGGGCUAAA-3' |
| RS002274 (Bacillus anthracis str. 'Ames Ancestor') | 5'-AAAUUCCUACG-GUGUACGUAGCAUAUGCAUG-------UCU--UAA-ACCAAUAAGUUUAAUAU-------GGAAGUUCAAUAUU--UAAAUGUAG CUA-----AC-AUGCCAUC----------------------------UUUUU-------AAGAAGGAA--GU---UACAAACAUUUG-UGAGAGC--AUC CAC--CUGU---GAG----AGCA--GGU-UUAU--GGAC-----AUCUAGAGAGA-ACGGCAU--AUGUGGGGCUAUA-3' |
| RS002275 (Listeria monocytogenes) | 5'-GAAACCCUAAU-GUAUUCGAUAUAGUUCCUGAUA-----UUUU-UGA-ACCGAACAAUUUUUUAUACCUA--GGGAGCUUGGAGUU--CCGGCGCGG CGC-----AC-AUGCCUU-----------------------------CACAC----------GAGGAA--GU---GCAAACCGUUAG-ACAGAGC--ACC CAC--CUGCUUUAAUUGAGAGCG--GGU-UCA-A-AGG-----AAGGGAAUCCUAAACGGUAC--GAUUGGGGUUUCU-3' |
| RS002276 (Listeria monocytogenes str. 4b F2365) | 5'-GAAACCCUAAU-GUAUUCGAUAUAGUUCCUAAUA-----UUUU-UGA-ACCGAACAAUUUUUUAUACCUA--GGGAGCUUGGAGUU--CCGGCGCGG CGC-----AC-AUGCCUU-----------------------------CACAC----------GAGGAA--GU---GCAAACCGUUAG-ACAGAGC--ACC CAC--CUGCUUUAAUUGAUAGCG--GGU-UCA-A-AGG-----AAGGGAAUCCUAAACGGUAC--GAUUGGGGUUUCU-3' |
| RS002277 (Listeria innocua) | 5'-GAAACCCUAAU-GUAUUCGAUAUAGUUCCUGAUA-----UUUU-UGA-ACCGAACAAUUUUUUAUACCUA--GGGAGCUUGGAGUU--CCGGCGCGG CGC-----AC-AUGCCUU-----------------------------CACAC----------GAGGAA--GU---GCAAACCGUUAG-ACAGAGC--ACC CAC--CUGCUUUAAUUGAGAGCG--GGU-UCAAA-GGA------AGGGAAUCCUAAACGGUAC--GAUUGGGGUUUCU-3' |
| RS002278 (Sporosarcina pasteurii) | 5'-UACAAGCUGCA-UUGUUCGU--AUCAUUAUUAAG-----UUU--UAA--CCUUUAAGCUGUAAAA-------GGGAGUUUUAUGAU--UGAAACUGA AAU-----GGCAAGCCUCGUU--------------------------CUUUUAAUUAACAACGAGGACAGAC---AGGCAAGUUUCU--GCGAAC--ACC CAC--UUUG---AGG----AGUGGUGGU-UUA---AGAC----UUUCUAGAGACGUACGGCAG--AGGCGGCUGAUAC-3' |
| RS002279 (Staphylococcus aureus subsp. aureus MSSA476) | 5'-AGUCAUCUGAG-UUGUUCGUAAGUUUGCUUUU-------UAAUUUGG-GCCUAACACUCUUUGAUCAA----GGGAGCCCAAUGGGUUUUCUUGCAG CGU-----AC-ACGCCUU-----------------------------AUAUG----------AAGGAC--GU---ACAAAACAAGAA-ACAGGGC--ACC CAC--CUGU--AUAU----AACA--GG--CCGAA-UGAU-CAAGCUAUUAUAACU-ACGGCAA---UACGGAC-UCUA-3' |
| RS002280 (Staphylococcus epidermidis ATCC 12228) | 5'-AGUCAUCUGUG-GUGUUCGUAAGUUUGCUUU---------UUAUUUGGGCCUAACACUCUUUGAUCA-----GGGAGCCCAAUAGGUUUUCUCGCAG CGC-----AC-ACGCCUC-----------------------------UAUAG----------GAGGAC--UU---GCAAAACGAGAA-ACAGGGC--ACC CAC--CUGU--AUAU----AGCA--GGC-CGAAU-GAU-CAAGCUAUUUAUAACU-ACGGCAU--CAACGGACUCUAU-3' |
| RS002281 (Clostridium tetani E88) | 5'-UAAUUUCUGAA-AUAUUUGAGGGUUCCAU----------AUUU-UGA-ACCUACAGAUCAUAAAC-------GGGAGUUCAAAAUU--UAGAUAUGA AAU-----GA----CCUAUAAGA------------------------CCAGU---UUAAGGCAAGG----AC--AAUGCAGUAUCUG-UGAGAAC--ACC CAC--CUAU-CAGAA----GAUA-GGGUGUCA-A-AAU----------UGGAGCAAACGGUAU---UUUGGAUUUCAG-3' |
| RS002282 (Clostridium acetobutylicum ATCC 824) | 5'-GAUUUUCUGAA-GUAUUUGUGAAGCUCUUA---------UUU--UGA-ACCUACAGUUCAAACAA-------GGGAGUUCAAUAUU---UAGAUGAG UAU-----AU-GUGC-UUCAUGUGAAUC-------------------CUUUU-ACGGUAUUGAAUGAG--AU---AGAUGCAUCUG--UGAGGAC--ACC CAC--CUAU-CGUAG---AGAUA--GGUGUCA---AAAU---------UGGGGUA-ACGGUAU---UUUGGAUUUACA-3' |
| RS002283 (Clostridium acetobutylicum ATCC 824) | 5'-UAUCUUCUAGA-GUAUACGCCAAGCUCUUA---------UC--UUGA-ACCUACAGUUUAAAAAC-------GGGAGUUCAAUAUA--UAAAUAUGG A-U-----AU-GGAUUUCU----------------------------UAUGU-----UUUAAGAAAAG--AU---A-GAAGUAUUUU-UGCGAGC--ACC CAC--CUAU--CAUU---AGAUA--GGUGUCAAU--GAA----------AGAGCA-GCGGUAU---UUUGGAUAUAUA-3' |
| RS002284 (Thermoanaerobacter tengcongensis MB4) | 5'-AAAACCCUGUG-GUGUUCGUGUGACCCGGUGAA------AGGU-UGA-GCCAACACCAAAAAUAA-------GGGAGCCUGGGCUU--UGGCAGUGG AUU-----GU-AGGCCGC-----------------------------CUCGU--------C-GCGGAA--AC---AUGAAGCUGCCA-AGAGGGC--ACC CAC--UUUG--UGAG----GACG--GGU-UCAAAACCU------ACCGGUAGGC--ACGGCAC---UAUGGGGUUUUU-3' |
| RS002285 (Thermoanaerobacter tengcongensis MB4) | 5'-AAGUUCCUGUG-GGGUUUGUAGCGGGCUAAUUU------GUUU-UCA-CCCAACGCAACCCAUAC-------GGGAAUCCGGGUU---CAUCAGUGG AUG-----AA-AUGCCUGG-----------------------------GAAA---------CCAGGAC--UU---CAGAAGCUGGUG-ACAGGGU--ACC CAC--CUGC---GAG----AGCA--GGGAUGA-A-AAC----------AUAGCCGUACGGCUC---CGUGGGUAAAGU-3' |
| RS002286 (Enterococcus faecalis V583) | 5'-GUAAAUCUGUG-AUGUACGCGUUGUCCUUUCACU-----GUGU-UGA--CCGAACAUUUUUAUUGAUAUCUAGGGAUCCUGCUUGUA-UCAAAGUUG GUA-----AC-AUGCCUU-----------------------------UUCUU----------UUGGUA--GU---UCAAUACUGCGA-UCGAGGA--ACC CAC--CUGC--UUAU--CUUGCG--GGU-UCA-A-UAC-----UCUAGGACGAUUACCGGCAU--CGACGGAUUUUAC-3' |
| RS002287 (Lactobacillus plantarum WCFS1) | 5'-AAAUUACUAAG-GUGUGCGCAUUGCUCUAAACAAA----GUGU--UG--CCGAACAAUUAAUACUACUUU--GGGAUGUCCGUUAG--CUAAUUCCA U-A-----AC-AUGCCUU-----------------------------AUCCU----------UUGGUA--GU----UAGCGAAUUAGUCAGAACG--UCC CAC--CUGC-CUUAA----AGCG--GG--UCA-A-UAC-----UGAAGGGCGAUUAACGGCAC--CACUAGUUUUUCC-3' |
| RS002288 (Lactococcus lactis subsp. lactis Il1403) | 5'-AAAGCACUGG-AAUGUGCGAGCUCUUUCAUUUUU---------UUGA--CCGACUAUAUUUGUAUUGCAUA-GGG-GUUCAUGAGAC-AUUCGGUAG CGUA-------AUACCUCG----------------------------AACGA-----AAGUAGGGGAA-G-----CUGAUGC-GAAG-CGAGAAC--ACC CAC--CUGG-CGUUU---UAGCG--GGU-UCAA--UAC------ACGGAAGAGCAUACGGCAUUCAAUCAGUGUUUUU-3' |
| RS002289 (Streptococcus pyogenes MGAS8232) | 5'-ACAUUGCUGUG-GCAUACGA-AUCCACAUCUAA------GUGU-UGA--CCGACUAUUUCUUUGUAUUUUC-GGGAAACAAAGAC---UCUUUCUAG UCU-----GC-AAGCCGU-----------------------------UUCAC----------GCGGAC--GCAACUUCCAAGAAAGA-GCGCGUU--ACC CAC--CUGCUUAUAC----UGCGCGGGC-UCA-A-UAC----AAAAACGUGGAUCACCGGUGCCAAUACAGCAUUCUU-3' |
| RS002290 (Streptococcus agalactiae NEM316) | 5'-ACAUUGCUGUG-GCAUACGA-AUCCACAUCUAA------GUGU-UGA--CCGACUAUUUCUUUGUAUUUC--GGGAAACGAAGU----CAUCUCUAG UGC-----GC-AAGCCGU-----------------------------UAACA--------C-GCGGAA--GC-CACUUAAAGAGGUG--CGAGUU--ACC CAC--CUGC--UUAUUUUGUGCG--GGA-UCA-A-UAC-----AAAAAGUGGAUCAUCGGUGCCAAUACAGCUUCCUA-3' |
| RS002291 (Streptococcus pneumoniae TIGR4) | 5'-GAAACGCUGUG-GUGUACGACUUCACACUUAA-G-----UGU--UGA--CCGACUAUUUUUUGUAUUAUUA-GGGAAACAAAAGUC--UUCUAACAG CAU-----GU-AGGCCGU-----------------------------CUCAC----------ACGGAA--AC-AGCUUCAGUUAGAG--CGAGUU--GCC CAC--CUGC-UUAAU----UGCGCGGGU-UCA---AUAC----AAACCGUGAAGUUUCGGCACCAAUACAGCUUUUUU-3' |
| RS002292 (Caulobacter crescentus CB15) | 5'-GUCUUGCUGUG-GCUCUCGUCGAAGAUUUCUAU------UCCCAGGG-ACCUUAAUCUCUCUAUC-------GGGACCUGUUCCCU----------- --C-----------CCGUGGC--------------------------CGUGG--------CUGCGG-----------GAA---------CACGGG--GCC CAC--CUGU---AAC---UAACA--GGU-UCGAGUGGAU-----UGAAACGUCUUCACGGUUC-UUCGCGGCGCCGCC-3' |
| RS002293 (Bartonella henselae) | 5'-GGUGUUCUGCG-CCUCUCGACAGGAAAUAACAUA-----UUCCUGAG-ACCUUAGUGAUUUCCAA-------GGGAGCUGUCCC----UGA------ --------------UUAAG----------------------------CUCGU------GGGCUUUU------------------UCA--UAUGGC--GCC CAC--CUAU--UUAU-----AUA--GGUUCCCAG-GGAU-----CAACUUUUUCCAUCGGUUG--UUGUGGAUCACCA-3' |
| RS002294 (Bartonella quintana str. Toulouse) | 5'-GGUGUUCUGCG-CUUCUCGACAGGAAAUAACAUA-----UCCUGAGA--CCUUAGUGAUCUCCAA-------GGGAGCUGUCCCU---GAUCAAG-- --------------CC-------------------------------CGUG-------------GG--------------CUUUUUC-AUAUGGC--GCC CAC--CUAU---UUU-----GUA--GGU-UCCCG-GGAU-----CAACUUUUUCCAUCGGUCG--UUGUGGAUCACCA-3' |
| RS002295 (Rhodopseudomonas palustris CGA009) | 5'-GCGAAGCUGCG-GGACGCGUCAGGAGCCAUAUA------UCCCCGGG-GCCUUAUCGAUCCUUUC-------GGGAACUGUCCC------------- -----------UGGCCGGGUC--------------------------CGUGG--------ACCCGGUC-A-------------------UAUGGU--GCC CAC--CUAC---UUU----CGUA-GGGAACUCCG-GGAU-----CGAGUGCUUCA-ACGGUCA--CCGUGGCCUCGCA-3' |
| RS002296 (Brucella melitensis 16M) | 5'-GGCGAACUGCG-CUUCCCGACAGGUGUAACAGCA-----UCCCCGGG-GCCUUAUUGAUCUCUAA-------GGGAGCUGUCCCU---GUGAAGG-- --------------CU-------------------------------UGCGG-------------G--------------CUUUCGC-AUAUGGC--GCC CAC--CUAC---UUU-----GUA--GGU-UCCCG-GGAU-----CAAUCACUACCAUCGGCCG--UCGUGGU-CGCCG-3' |
| RS002297 (Agrobacterium tumefaciens str. C58) | 5'-UGCGUUCUGCG-CUUCCCGACAGGAACCACA--------AUCCCUGGGGCCAUACUCGAUCCAAA-------GGGAGCUGUCCC------------- --------UG---GCCAGU----------------------------CCUGU------GGGACUGGA---CA-----------------CACGGC--GCC CAC--CUAC---UUU----UGUA--GGCACCCAG-GAUC-----GUAAAUCUCCA-UCGGUCG--CCGCGGAUCGCAC-3' |
| RS002298 (Sinorhizobium meliloti) | 5'-GGCGAUCUGCG-CUUCCCGACAGGAACCACAA-------UCCCCGGG-GCCAUACACGAUCUCAA-------GGGGACUGUCCCUG----------- --G-----------CCGGA----------------------------CCCGU------GGGUCCGG-----------GCA---------UACGGU--GCC CAC--CUAC---CUA-----GUA--GGU-ACCCG-GGAU----CGUAAAUCAUCCAUCGGUCG--UCGUGGAUCGCAC-3' |
| RS002299 (Anaplasma phagocytophilum) | 5'-GGGGGUCUGCG-UUGUUCGU--GUAGGUUGAAAG-----UGCCUCGA-GCCCGAUUUUGUUCUUAUA-----GGGAGCCGUCAC----UGGUAAC-- --------------CU-------------------------------CGAGU------------AG--------------GUUAUUA--CACGGC--GCC CAC--CUUA---GCU-----UUA--GUC-UC-AG-G-AC--ACUAAGCAAAGCGUUACGGCAA--AUGCGGAUCUCCU-3' |
| RS002300 (Rickettsia conorii) | 5'-A-UUAGCUGCU-UGGUUCGUGAGCUUAAUAUUAA-----CCU--AGG-ACUACCACUAACUUUUA-------GGACAUCGUCCC----UGUCUAAUA --------------CU-------------------------------AAUUC------------AG---------U----UUAGAUA--UAUGAA--GUC CAC--CUUU---ACA----UAAA--GGU-CUUUGAAGG--------AUUUUAAGUAACGGCCA--AAGCGGUCAUGUA-3' |
| RS002301 (Rickettsia conorii str. Malish 7) | 5'-UAUUAGCUGCU-UGGUUCGUGAGCUUAAUAUUAA-----CCU--AGG-ACUACCACUAACUUUUA-------GGACAUCGUCCC----UGUCUAAUA --------------CU-------------------------------AAUUC------------AG---------U----UUAGAUA--UAUGAA--GUC CAC--CUUU---ACA----UAAA--GGU-CUUUGAAGG--------AUUUUAAGUAACGGCCA--AAGCGGUCAUGUA-3' |
| RS002302 (Rickettsia typhi str. Wilmington) | 5'-UCUUGGCUGCU-UGGUGCGUGAGCUUAAUAUUAA-----CCUAGGACUACCACUAACUUUUA----------GGACAUCAUCUC----UGUCUAACA --------------CU-------------------------------AAUUC------------AG---------U----UUAGAUA--UAUGAA--GUC CAC--CUUU---ACA----UCAA--GGUCUUUGA-AGGAUU--------UUAAGUAACGGCCA--AAGCGGUCAUGUA-3' |
| RS002303 (Rickettsia prowazekii) | 5'-UCUUGGCUGCU-UGGUGCGUGAGCUUAAUAUUAA-----CCU--AGG-ACUACCACUAACUUUUA-------GGACAUCGUCUC----UGUCUAAUA C-------------UC-------------------------------AUUCA------------GU--------------UUAGAUA--UAUGAA--GUC CAC--CUUU---ACA----UCAA--GGU-CUUUGAAGG--------AUUUUAAGUAACGGCCA--AAGCGGUCAUGUA-3' |
| RS002304 (Wolbachia endosymbiont of Drosophila melanogaster) | 5'-AAGGGUCUGU-UCUAUGCGUUAUGAGUUAAGUUAAA---UUUCCCGA--GCGAUAAUUUCUAGUCAA-----GGGAAUUGCCUC----UGUUAAU-- --------------UU-------------------------------CGUUG------------AA--------------AUUGAUA--CGCGAU--GCC CAC--CUUA---ACU-----UUA--GUC-UC-AG-GAAU-----CUACUAAGGCUGACGGUAG--AUACGGAUCCUAU-3' |
| RS002305 (Bordetella pertussis) | 5'-UUGUCCCUGCC-GUGCUCGUGACUUGGCCAUACAU----UCUCU-GA-ACCUAUGUCUUACGGCAUAUG---GGUUGCGGGAGU----GUAGAGUUG GAG--------UGAUCGUCUA--------------------------CUCGU--------AGACGAACCC-------GAUGCUCUUC-GGAUCGC--GAC CAC--CUUG---AAC----CUCA-GGGU-UC--G-AGAU-----GCCGGCC--UUGACGGCAC--AGGCGGGG-CAUC-3' |
| RS002306 (Bordetella parapertussis) | 5'-UUGUCCCUGCC-GUGCUCGUGACUUGGCCAUACAU----UCUCU-GA-ACCUAUGUCUUACGGCAUAUG---GGUUGCGGGAGU----GUAGAGCUG GAG--------UGAUCGUCUA--------------------------CUCGU--------AGACGAACCC-------GAUGCUCUUC-GGAUCGC--GAC CAC--CUUG---AAC----CUCA-GGGU-UC--G-AGAU-----GCCGGCC--UUGACGGCAC--AGGCGGGG-CAUC-3' |
| RS002307 (Ralstonia solanacearum) | 5'-GUUUCCCUGCC-UGGUUCGCCA--AGGCCAUUAA-----UUCCUUGA-ACCGAUAAGCAUUGCUU-------GG-UGCGGGAUAUG--CCGUGUGGG CGAGCGCGUC-UUCCAGCGCACAGCAGGCGACGAAAGUCGUGUGCUCCCUGU-------GCCGGUGAU--GU--ACCCAAAAUGCGG-CUUCCGC--AGC CAC-UCUGAACCAUA----CUUG--GGU-UCA-G-GAGG-----C----GGGUCUAGCGGCCG--AGGUGGGGACCCA-3' |
| RS002308 (Chromobacterium violaceum ATCC 12472) | 5'-UAUCCCCUGCG-GUGUUCGUGAAGGCACACAA-------UUCCUUUGUACCAAUGCGUUCGCUUUU------GGCUGCCAGCGUG----AGACAUGG GCGU----GCC---GCGUU----------------------------CUCUG------GUGAACGC----GC---CCGAAAUGUCU--GGCAGGC--GGC CCCUCCUGG---AAA-----CAG--GGUACAAG-CGAA--------UUUAGCCCGAACGGCAC--UCGCGGGGGUUCC-3' |
| RS002309 (Neisseria meningitidis Z2491) | 5'-UUUUCCCUGCG-GUGUCCGCGA--AGGCAUAUAU-----UCCUUUGA-ACCAAUAAGUUCGCUUAA------GGUUGCCGGGAGC----AGUAGUGG G-C-----GC-GAGCGUC-----------------------------CUUUU----------GCGGAC--GC-ACCCGAAACUACC---CGAGGC--AGC CGC--CUUG---UCA-----GCA-AGGU-UCAAG-CGGA-----UUCGGCCG--AAACGGCUC--UCGCGGGGAUUCC-3' |
| RS002310 (Nitrosomonas europaea ATCC 19718) | 5'-UAAUCCCUGCG-GUGUUUGUCAAGGUUUGUAU-------UCUU-UGA-ACCAAUUCGUUGUAUCU-------GGCUGCCAGUCAA---UGGUCGCUG UUGU----GC-GUA-CUCU----------------------------CUCGU---------GGAGCAU--GC---CUGAUGCGGCCG--ACAGGC--GGC CAC-UCUUG---AAC-----CUG-UGGU-UCA---AGA------UAACAACCUG--ACGGCAU--UCGCGGGGACCCC-3' |
| RS002311 (Bdellovibrio bacteriovorus) | 5'-AGAAGGGUUCG-ACGG-CGUAAAGCUCUAUC-------GAAAA-UAA-ACCUUACAAGCAUAUUUUU-----GGGGACUGUCCC----UGACAAUGG UGA-----GC-AAGCUCAG----------------------------CUCGU--------ACUGAGAA--GC---CUAAAGUUGUUA-UCAUGGU-UACC CAC--CUUA-GCUAA----AACA--GGU-UUACUUUUU-------------CAGAGUGGUCUU---CGAGCCUUUUUU-3' |
| RS002312 (Desulfotalea psychrophila LSv54) | 5'-AUUCCCCUGUG-CUGUUGGUGAUUGCUAAAGUGU------GU--UGA-GCCAACUCUCAAUAAAA-------GGGCGUUGUCUCU---UGUCAGU-- --------AA-AGGUGAA-----------------------------UCGGU----------GACGAA--UU--GGCUGAGCUGAUA-AUAUGAU--GCC CAC--CUAU--UAAU-----UUA--GGU-UUA---AC-------UAUCUUAGCGACACGGCAG---UGUGGGGGAUUU-3' |
| RS002313 (Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough) | 5'-GUACCCCUGGA-GUGUGCGUGAUAGAUAUGCCAUC----GC---UGA--CCUCACAAGCUUGAAAUA-----GGGCAUCGGUACG---GUGGACCGG UGU-----GC-ACGCCCGG----------------------------CAUGA---------CCGGGUA--GC---CUGAAGGCCCGC---CCGAGAAGCC CCC--CUGG-UCAAC----ACCA--GG--UCC---UGCU-----UUGGUAUGUCACACGGCUC---UCCGGGGCCACU-3' |
| RS002314 (Geobacter sulfurreducens PCA) | 5'-UUCUCUCUACC-AUGCGCGUGAGGCUGACAC--G-----CC-C-C-A-GCGGAACAUUUACUAUCAUUU---GG-GGGCUCUUU----AAGCCGUGG UGU-----GC-UGCCCCA-----------------------------GUACG----------UGGGAUUUGC---CUGAAGCGGCAC--AGAGCC--UGC CAC--CUGU---AAG-----GAACUCGC-U-GUG-AGGC-----CCUUACAAGCCAACGGCAU---GGUGGAGAGACU-3' |
| RS002315 (Shewanella oneidensis MR-1) | 5'-UGCUCCCUGGG-AUGCAGGCCAACUGGUAAU--------GUCCCUGU-GCCGAUAAUUUUGAUCUCA-----GGGUGAAUGCUU----UACUGACAU UGA-----GC-AGGCUCGG----------------------------CUCGU--------ACCGAGAA--GC---C-UUAGGAGGUA-AUCAUUU--ACC CGC--CUUG---AAC-----CUA-CGGU-UCAAG-GGCU-------ACACCGGUA-GCGGCAU---UCUGGGGAGCAU-3' |
| RS002316 (Escherichia coli) | 5'-AUUUCUCUGAG-AUGUUCGCAAGCGGGCCAGU--------CCCCUGA-GCCGAUAUUUCAUACCACAA----GAAUGUGGCGCUC---CGCGGUUGG UGA-----GC-AUGCUCGG----------------------------UCCGU---------CCGAGAA--GC---CUUAAAACUGCG-ACGACAC--AUU CAC--CUUG---AAC-----CAA-GGGU-UCAAG-GG------UUACAGCCUGCG-GCGGCAU---CUCGGAGAUUCC-3' |
| RS002317 (Escherichia coli CFT073) | 5'-AUUUCUCUGAG-AUGUUCGCAAGCGGGCCAGU--------CCCCUGA-GCCGAUAUUUCAUACCACAA----GAAUGUGGCGCUC---CGCGGUUGG UGA-----GC-AUGCUCGG----------------------------UCCGU---------CCGAGAA--GC---CUUAAAACUGCG-ACGACAC--AUU CAC--CUUG---AAC-----CAA-GGGU-UCAAG-GG------UUACAGCCUGCG-GCGGCAU---CUCGGAGAUUCC-3' |
| RS002318 (Escherichia coli) | 5'-AUUUCUCUGAG-AUGUUCGCAAGCGGGCCAGU-------CCCC-UGA-GCCGAUAUUUCAUACCACAA----GAAUGUGGCGCUC---CGCGGUUGG UGA-----GC-AUGCUCGG----------------------------UCCGU---------CCGAGAA--GC---CUUAAAACUGCG-ACGACAC--AUU CAC--CUUG---AAC-----CAA-GGGU-UCAAG-GG------UUACAGCCUGCG-GCGGCAU---CUCGGAGAUUCC-3' |
| RS002319 (Erwinia carotovora subsp. atroseptica SCRI1043) | 5'-AUUUCUCUGAG-AUGUUUGUCAGCGGGCCAGU--------CCCCUGA-GCCGAUAUUUUAUACCAAACA---GAAUGUAAUGCUC---UGCGGUUGG UGC-----GC-AAGCUCGG----------------------------UUCGU---------CCGAGAA--GC---CUUAAGACUGCG-ACGUUAU--GUU CAC--CUUG---AAC-----CAA-GGGU-UCAAG-GG------UUACAGCCUGCG-GCGGCAU---CUCGGAGAUCCC-3' |
| RS002320 (Photorhabdus luminescens subsp. laumondii TTO1) | 5'-AUUUCUCUGAG-AUGUUCGUUAACGGGGAAAGU-------CCCCUGA-GCCGAUAUUUCAUACAUUAUA---GAAUGUGGUGCUCC--GUAGUCUGG UGU-----GC-AUGCUCGG----------------------------UCCAG---------CCGAGAA--GC---CUUAAAG-CUGCGACGCUGC--GUU CAC--CUUG---AAC----CGAG--GGU-UCAAG-GG-------UUACUACCUGUAACGGCAU---CUUGGAGAAUCU-3' |
| RS002321 (Salmonella enterica subsp. enterica serovar Typhi Ty2) | 5'-AUUUCUCUGAG-AUGUUUGCAAGCGGGCCAGU--------CCCCUGA-GCCGAUAUUUCAUACCACAA----GAAUGUGGCGCUC---CGCGGUUGG UGA-----GC-AUGCUCGG----------------------------UUCGU---------CCGAGAA--GC---CUUAAAACUGUG-ACGACAC--AUU CAC--CUUG---AAC-----CAA-GGGU-UCAAG-GG------UUACAGCCUGCG-GCGGCAU---CUCGGAGAUUCC-3' |
| RS002322 (Shigella flexneri 2a str. 2457T) | 5'-AUUUCUCUGAG-AUGUUCGCAAGCGGGCCAGU--------CCCCUGA-GCCGAUAUUUCAUACCACAA----GAAUGUGGCGCUC---CGCGGUUGG UGA-----GC-AUGCUCGG----------------------------UUCGU---------CCGAGAA--GC---CUUAAAACUGCG-ACGACAC--AUU CAC--CUUG---AAC-----CAA-GGGU-UCAAG-GG------UUACAGCCUGCG-GCGGCAU---CUCGGAGAUUCC-3' |
| RS002323 (Yersinia pestis KIM) | 5'-AUUUCUCUGAG-GUGUUUGCCAGCGGGCCAGU--------CCCCUGA-GCCGAUAUUUAAUACCAACA----GAAUGUAGUGCUC---CGUAACCGG UGA-----GC-AUGCUCGG-----------------------------UCCG---------CCGAGAA--GC---CUUAAGGUUGCG-ACGCUGC--GUU CAC--CUUG---AAC-----CAA-GGGU-UCAAG-GG------UUACAGCCUGCG-ACGGCAC---CUCGGAGAUCCC-3' |
| RS002324 (Haemophilus influenzae Rd KW20) | 5'-AAUUACCUGGA-GUGUUCGUCAGUAGGCUAU--------GUCCCUGA-GCCGAUACUUUAAAUCUUAU----AAAUUGGUUUCC----UAUCGUUGG UGU-----GU-AGGCUUAACCUUUGA---------------------CUCGU-UCAUUGGGCUAAGAA--AC---CUGAAAACGGUA-UCAACUG--AUU U-C--CUUG---AAC---CGUCG--GGU-UCAAG-GACU------ACUGCCCGCA-GCGGCAC---UCUGGGGUCUUC-3' |
| RS002325 (Haemophilus ducreyi 35000HP) | 5'-CACUACCGGGG-GUGUUCGUUAUUAGUUAC---------GUCCCUGA-GCCGAUAAUUGAAAACUUU-----GAGUUGAACAUCU---AAUCGCUGG UGA-----GC-AAGCUUAC----------------------------CUUGA---------GUAAGAA--GC---CUAAAAGCUAUU-AAGCUUA--ACU C-C--CUUG---AAC----CAUU-UGGU-UCAAG-GGCC------UUCACUGAUA-ACGGCAC---UCCGGGUAUCUU-3' |
| RS002326 (Pasteurella multocida subsp. multocida str. Pm70) | 5'-GAUUACCUGAG-GUGUUUGCCAGUGGGUUAU--------GUCCCUGA-GCCGAUACUUUUAUUUUAU-----GAAUCGGUUUCU----AAUUGUUGG UGU-----GC-AUGCUUAG----------------------------CUUGA---------CUAAGAA--GC---CUAAAAAUAGUU-AUAACUG--AUU C-C--CUUG---AAC----CGUU-GGGU-UCAAG-GACU-----G--AGACUUGCAGCGGCAU---CUCGGGUUCUUC-3' |
| RS002327 (Acinetobacter sp. ADP1) | 5'-UUGUCUCUGGG-AUGCUCGCCAGCGAGUCAGAAU-----CCCC-UGA-GCCGAUACUAUCACUUUA------GGAUAGCGUUCUG---CAUAUUUAG AGU-----GU-AUGCCUAC----------------------------CCAGA---------GUAGGAA--AC---CCAGCAAGUAUG-CGUCGCU---UC CAC--CUUG---AAC----UUAA-GGGU-UCAAG-GG-------UAAUGACAGGCAGCGGCAU--CUUCGGAGGCAUU-3' |
| RS002328 (Pseudomonas aeruginosa PAO1) | 5'-CGCUCCCUGGU-GUGUUGGCCAGUCGGUGAU--------GUCCCUGA-GCCGAUAACUGCAACAAC------GGAGGUUGCCAGU----UGGACCGG UGU-----GC-AUGUCCG-----------------------------CACGA----------CGGAAA--GC---CUUAAGGUCUA--CUGCAAC--CGC CAC--CUUG---AAC---UUUCG--GGU-UCAAG-GGCU-------AACCCGACA-GCGGCAC--GACCGGGGAGCUA-3' |
| RS002329 (Pseudomonas putida KT2440) | 5'-CACUCCCUGGG-GGAUGCGCCAGUCGGUUAU--------GUCCCUGA-GCCGAUACGCACAACCAC------GGGGGUUGCACGCU---GGGGCCGG UGU-----GC-AUGUCCG-----------------------------CCCGA----------CGGAAA--GC---CUUAACGCCCC--CUGCAAU--CUC CAC--CUUG---AAC---UUUCG--GGU-UCAAG-GGCU-------ACACCGAUA-GCGGUCU--UAUCGGGGAGCCU-3' |
| RS002330 (Photobacterium profundum) | 5'-UUGACCCUAGG-GUGUACGUCAGUGUGUCAAC-------GUCCCCGA-GCCGAUAAGCAAAUAACCC-----GGAUCAGCUUUU----AUUAGCUAU UGU-----GC-AAGCUCAG----------------------------CUCGA---------CUGAGAA--GC---C-UGCGGCUAAU-GUUGCUG--AAC CAC--CUUG---AAC----AUCU--GGU-UCAAG-GGCC------UAGAUGCGCA-ACGGCAC---CUUGGGG-CAUA-3' |
| RS002331 (Vibrio cholerae O1 biovar eltor str. N16961) | 5'-UUUACCCUGGG-GUGUUCGUCAGCGGAUUUAU-------GUCCCUGA-GCCGAUAAGCAACAUAACA-----GGGUUGGUAUUG----GGUAGCUAU UGA-----GC-AAGCUCGG----------------------------CUUGU--------ACCGAGAA--GC---C-UGCGGUUACC-AUUACUG--AUC CGC--CUUG---AAC-----CUGAUGGU-UCAAG-GGCU------ACGAUCCUCA-ACGGCAU---CCCGGGGUUCUC-3' |
| RS002332 (Xanthomonas axonopodis pv. citri str. 306) | 5'-CGUUCUCUGCG-GUAAACGACAGCGUGCAAAACAUU---CGCCUUGU--CCCUUAAUUACGACCAC------GGGGGCGCGAC-----GAAGCCGGG UGU-----GC-AAGUCCGC----------------------------CUUGU--------AGCGGGAA--GC---C-CGAUGGCCUC-ACAACGU--CCC CA---CUUG---AAC----CCCG--GGU-UCAAG-GUCG-----UUUCGCCCGC-AUCGUCAC---GGCGGAGAAUGC-3' |
| RS002333 (Xanthomonas campestris pv. campestris str. ATCC 33913) | 5'-CGUUCUCUGCU-GUGAACGACGGUGUGCAAAACAUU---CGCCUUGU--CCCUUAAUUACGACCAC------GGGGGCGCGACG-----AAGCCGGG AGU-----GC-AAGUCCGC----------------------------CUUGU--------AGCGGGAA--GC---C-CGACGGCCU-AACAACGU--CCC CA---CUUG---AAC----CCCG--GGU-UCAAG-GUCG-----UUUCGCACAC-AUCGUCAU---GGCGGAGAAUGC-3' |
| RS002334 (Xylella fastidiosa 9a5c) | 5'-CGUUCUCUGCU-GUGAACGACGGCGCGUGCAAACAUUUA-GCCUUGU--CCCUUAAUCACGACCAA------GGG-GCGCGAC-----GAUACCGGG AGU-----GC-AAGUCUGC----------------------------CUUAG-------CAGCGGAAA--GC---C-CAAUGGUAUU-UCAACGC--CUC CA---CUUG---AAC----CACA--GGU-UCAAG-GU------CGUUUCGCGAGCAUCGUCAU---AGCGGAGAAUGC-3' |
| RS002335 (Xylella fastidiosa Temecula1) | 5'-CGUUCUCUGCU-GUGAACGACGGCGCGUGCAAACAUUUA-GCCUUGU--CCCUUAAUCACGACCAA------GGAGGCGCGAC-----GAUACCGGG AGU-----GC-AAGUCUGC----------------------------CUUAG-------GAGCGGAAA--GC---C-CAAUGGUAUU-UCAACGC--CGC CA---CUUG---AAC----CACU--GGU-UCAAG-GU------CGUUUCGCGAGCAUCGUCAU---AGCGGAGAAUGC-3' |
| RS002336 (Borrelia burgdorferi B31) | 5'-AAGCUCCUGGG-AGGUUUAAUUUUAAGAAUUAGAGUUA-UUUU-UUU-GCGACAUCUCAUAAAAUUUA----GGAAUUUGAAUAUU--UUUAGUCAA UG---------AUAGC-------------------------------CAAAA------------GCAA-U-----UCAGAGGUUAAGAAUAAAAA--UUC CGC--CUUG---AAA-----AAUAGCGCUAAAUA-AAA-------AUGUUCUUAUGUUGGCUU---UUUGGGAGUUUA-3' |
| RS002337 (Chlorella vulgaris) | 5'-GAGAUUAUGUA-CUCCACUCCGAUUACCUA---------GUUU-UGA--CCGAACAUUUUUUUAUAC-----GGGAGCUUGCCCUU--UCCUUUCUG CAU-----AA-AUGCCCUC-----------------------------AUUA---------GAGGCAC--UU---AUAAAGUCAGGA-AGAAAGC--ACC CAC--CUGC--CAUG---GUGCG-GGGU-UCA-A-AAC------GAAGGAAAGGA-GGGGAAGAAAUAAGAAAGAUAU-3' |
References:
- Griffiths-Jones, S., Bateman, A., Marshall, M., Khanna, A., Eddy, S.R., RFam: an RNA family database, Nucleic Acids Research, 2003, 31, 1, 439-441.

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