trna-allnuclear
TGC PHAGE T5 VIRUS
GGGCGAATAGTGTCAGCGGGAGCACACCAGACTTGCAATCTGGTAGGGAGGGTTCGAGTCCCTCTTTGTCCACCA
TGC ARCHAEGLOBUS FULG. ARCHAE
GGGCTCGTAGCTCAGCGGGAGAGCGCCGCCTTTGCGAGGCGGAGGCCGCGGGTTCAAATCCCGCCGAGTCCA
1
99
-GGGCGAATAGTGTCAGC-GGG--AGCACACCAGACTTGCAATCTGGTA-------------------G-GGAGGGTTCGAGTCCCTCTTTGTCCACCA
-GGGCTCGTAGCTCAGC--GGG--AGAGCGCCGCCTTTGCGAGGCGGAG-------------------GCCGCGGGTTCAAATCCCGCCGAGTCCA---
-GGGCKMRTAGYKYMRS--GGG--AGMRCRCCRSMYTTGCRAKSYGGWR-------------------G-SGMGGGTTCRARTCCCKCYKWGTCCA---
1
1
2
95
7
9
10
11
29
4
15
25
30
30
31
47
5
36
42
48
71
72
88
5
77
7
96
4
ERPIN
2
18
3
2002
Patrick
Gendron
D.
Gautheret
A.
Lambert
Direct RNA motif definition and identification from
multiple sequence alignments using secondary structure profiles.
J. Mol. Biol.
313
1003,1011
2001