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taxonomy.h

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00001 /*                               -*- Mode: C -*- 
00002  * taxonomy.h
00003  * Copyright © 2003 Laboratoire de Biologie Informatique et Théorique
00004  *                  Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.1 $
00008  * $Id: taxonomy.h,v 1.1 2003/10/01 13:31:28 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_taxonomy_h_
00029 #define _rnaml_taxonomy_h_
00030 
00031 #include "object.h"
00032 #include "xmlcpg.h"
00033 
00034 
00035 
00039 typedef struct rnamlTAXONOMY rnamlTaxonomy;
00040 
00045 rnamlTaxonomy* rnamlnewTaxonomy ();
00046 
00052 rnamlTaxonomy* rnamlcloneTaxonomy (const rnamlTaxonomy *taxonomy);
00053 
00058 void rnamldeleteTaxonomy (rnamlTaxonomy *taxonomy);
00059 
00065 int rnamlisTaxonomy (const rnamlObject *obj);
00066 
00073 int rnamlequalsTaxonomy (const rnamlTaxonomy *left, const rnamlTaxonomy *right);
00074 
00080 const char* rnamlgetTaxonomyDomain (const rnamlTaxonomy *taxonomy);
00081 
00088 void rnamlsetTaxonomyDomain (rnamlTaxonomy *taxonomy, const char *domain);
00089 
00095 const char* rnamlgetTaxonomyKingdom (const rnamlTaxonomy *taxonomy);
00096 
00103 void rnamlsetTaxonomyKingdom (rnamlTaxonomy *taxonomy, const char *kingdom);
00104 
00110 const char* rnamlgetTaxonomyPhylum (const rnamlTaxonomy *taxonomy);
00111 
00118 void rnamlsetTaxonomyPhylum (rnamlTaxonomy *taxonomy, const char *phylum);
00119 
00125 const char* rnamlgetTaxonomyClass (const rnamlTaxonomy *taxonomy);
00126 
00133 void rnamlsetTaxonomyClass (rnamlTaxonomy *taxonomy, const char *clazz);
00134 
00140 const char* rnamlgetTaxonomyOrder (const rnamlTaxonomy *taxonomy);
00141 
00148 void rnamlsetTaxonomyOrder (rnamlTaxonomy *taxonomy, const char *order);
00149 
00155 const char* rnamlgetTaxonomyFamily (const rnamlTaxonomy *taxonomy);
00156 
00163 void rnamlsetTaxonomyFamily (rnamlTaxonomy *taxonomy, const char *family);
00164 
00170 const char* rnamlgetTaxonomyGenus (const rnamlTaxonomy *taxonomy);
00171 
00178 void rnamlsetTaxonomyGenus (rnamlTaxonomy *taxonomy, const char *genus);
00179 
00185 const char* rnamlgetTaxonomySpecies (const rnamlTaxonomy *taxonomy);
00186 
00193 void rnamlsetTaxonomySpecies (rnamlTaxonomy *taxonomy, const char *species);
00194 
00200 const char* rnamlgetTaxonomyStrain (const rnamlTaxonomy *taxonomy);
00201 
00208 void rnamlsetTaxonomyStrain (rnamlTaxonomy *taxonomy, const char *strain);
00209 
00216 xmlcpgObject* rnamltoXMLTaxonomy (const rnamlTaxonomy *taxonomy);
00217 
00218 #endif
00219 

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