00001 /* -*- Mode: C -*- 00002 * model.h 00003 * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique 00004 * Université de Montréal. 00005 * Author : Patrick Charbonneau 00006 * Created On : Wed Sep 12 16:48:15 2003 00007 * $Revision: 1.7 $ 00008 * $Id: model.h,v 1.7 2003/10/01 13:10:52 larosem Exp $ 00009 * 00010 * This file is part of xmlcpg. 00011 * 00012 * xmlcpg is free software; you can redistribute it and/or modify it under 00013 * the terms of the GNU Lesser General Public License as published by the Free 00014 * Software Foundation; either version 2 of the License, or (at your option) 00015 * any later version. 00016 * 00017 * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY 00018 * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS 00019 * FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for 00020 * more details. 00021 * 00022 * You should have received a copy of the GNU Lesser General Public License 00023 * along with xmlcpg; if not, write to the Free Software Foundation, Inc., 00024 * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA 00025 */ 00026 00027 00028 #ifndef _rnaml_model_h_ 00029 #define _rnaml_model_h_ 00030 00031 #include "modelinfo.h" 00032 #include "base.h" 00033 #include "strannotation.h" 00034 #include "secondarystructuredisplay.h" 00035 #include "object.h" 00036 #include "xmlcpg.h" 00037 00038 00039 00043 typedef struct rnamlMODEL rnamlModel; 00044 00049 rnamlModel* rnamlnewModel (); 00050 00056 rnamlModel* rnamlcloneModel (const rnamlModel *model); 00057 00062 void rnamldeleteModel (rnamlModel *model); 00063 00069 int rnamlisModel (const rnamlObject *obj); 00070 00077 int rnamlequalsModel (const rnamlModel *left, const rnamlModel *right); 00078 00085 const char* rnamlgetModelId (const rnamlModel *model); 00086 00093 void rnamlsetModelId (rnamlModel *model, const char *id); 00094 00101 rnamlModelInfo* rnamlgetModelModelInfo (rnamlModel *model); 00102 00108 void rnamlsetModelModelInfo (rnamlModel *model, rnamlModelInfo *modelInfo); 00109 00115 void rnamladdModelBase (rnamlModel *model, rnamlBase *base); 00116 00122 xmlcpgList* rnamlgetModelBases (rnamlModel *model); 00123 00130 rnamlStrAnnotation* rnamlgetModelStrAnnotation (rnamlModel *model); 00131 00137 void rnamlsetModelStrAnnotation (rnamlModel *model, rnamlStrAnnotation *strAnnotation); 00138 00145 rnamlSecondaryStructureDisplay* rnamlgetModelSecondaryStructureDisplay (rnamlModel *model); 00146 00152 void rnamlsetModelSecondaryStructureDisplay (rnamlModel *model, rnamlSecondaryStructureDisplay *secondaryStructureDisplay); 00153 00160 xmlcpgObject* rnamltoXMLModel (const rnamlModel *model); 00161 00162 #endif 00163