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AliSequence.h

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00001 /*                               -*- Mode: C++ -*- 
00002  * AliSequence.h
00003  * Copyright © 2002-03 Laboratoire de Biologie Informatique et Théorique
00004  *                  Université de Montréal.
00005  * Author           : Patrick Charbonneau
00006  * Created On       : Wed Sep 12 16:48:15 2003
00007  * $Revision: 1.2 $
00008  * $Id: AliSequence.h,v 1.2 2003/10/18 00:20:02 larosem Exp $
00009  *
00010  * This file is part of xmlcpg.
00011  *
00012  * xmlcpg is free software; you can redistribute it and/or modify it under
00013  * the terms of the GNU Lesser General Public License as published by the Free
00014  * Software Foundation; either version 2 of the License, or (at your option)
00015  * any later version.
00016  *
00017  * xmlcpg is distributed in the hope that it will be useful, but WITHOUT ANY
00018  * WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
00019  * FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public License for
00020  * more details.
00021  *
00022  * You should have received a copy of the GNU Lesser General Public License
00023  * along with xmlcpg; if not, write to the Free Software Foundation, Inc.,
00024  * 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
00025  */
00026 
00027 
00028 #ifndef _rnaml_AliSequence_h_
00029 #define _rnaml_AliSequence_h_
00030 
00031 extern "C" {
00032 #include "alisequence.h"
00033 }
00034 
00035 #include "Object.h"
00036 
00037 
00038 
00039 namespace rnaml
00040 {
00041   class MoleculeId;
00042   class SeqData;
00043   
00044 
00045 
00046   class AliSequence : public Object
00047   {
00048 
00049   public:
00050 
00051     // LIFECYCLE ------------------------------------------------------------
00052 
00056     AliSequence () : Object ((rnamlObject*) rnamlnewAliSequence ()) { }
00057 
00062     AliSequence (const AliSequence &right) : Object (right) { }
00063 
00068     AliSequence* clone () const { return new AliSequence (*this);}
00069 
00073     virtual ~AliSequence () { }
00074 
00075     // OPERATORS ------------------------------------------------------------
00076 
00082     AliSequence& operator= (const AliSequence &right);
00083 
00084     // ACCESS ---------------------------------------------------------------
00085 
00090     MoleculeId* getMoleculeId () const;
00091 
00096     void setMoleculeId (MoleculeId *moleculeId);
00097 
00102     SeqData* getSeqData () const;
00103 
00108     void setSeqData (SeqData *seqData);
00109 
00110     // METHODS --------------------------------------------------------------
00111 
00112     // I/O  -----------------------------------------------------------------
00113 
00114   };
00115 }
00116 
00117 #endif

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