ISMB'98 Accepted Papers
A Computational System for Modelling Flexible
Protein-protein and Protein-DNA Docking
M.J.E. Sternberg, P. Aloy, H.A. Gabb, R.M. Jackson, G. Moont,
E. Querol, F.X. Aviles
Genetic Algorithms for Protein Threading
J. Yadgari, A. Amir, R. Unger
Advanced Query Mechanisms for Biological Databases
I-M. A. Chen, A.S. Kosky, V.M. Markowitz, E. Szeto,
T. Topaloglou
Compression of Strings with Approximate Repeats
L. Allison, T. Edgoose, T.I. Dix
Sequence Assembly Validation by Multiple Restriction
Digest Fragment Coverage Analysis
E.C. Rouchka, D.J. States
IMGT/LIGM-DB: A Systematized Approach for ImMunoGeneTics
Database Coherence and Data Distribution Improvement
V. Giudicelli, D. Chaume, M-P. Lefranc
Segment-based Scores for Pairwise and Multiple Sequence
Alignments
B. Morgenstern, W.R. Atchley, K. Hahn, A. Dress
Computational Applications of DNA Physical Scales
P. Baldi, S. Brunak, Y, Chauvin, A.G. Pedersen
A Map of the Proteins Space - An Automatic Hierarchical Classification
of all Known Proteins
G. Yona, N. Linial, N. Tishby, M. Linial
Automated Clustering and Assembly of Large EST Collections
D.P. Yee, D. Conklin
Phylogenetic Inference in Protein Superfamilies: Analysis
of SH2 Domains
K. Sjolander
BioSim - A New Qualitative Simulation Environment for Molecular
Biology
K.R. Heidtke, S. Schulze-Kremer
TAMBIS: Transparent Access to Multiple Bioinformatics
Information Sources. An Overview
P.G. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton,
R. Stevens
Genexpress: A Computer System for Description, Analysis and
Recognition of Regulatory Sequences in Eukaryotic Genome
N.A. Kolchanov, M.P. Ponomarenko, A.E. Kel, Y.V. Kondrakhin,
A.S. Frolov, F.A. Kolpakov, O.V. Kel, E.A. Ananko,
E.V. Ignatieva, O.A. Podkolodnaya, I.L. Stepanenko,
T.I. Merkulova, V.N. Babenko, D.G. Voroblev,
S.V. Lavyushev, Y.V. Ponomarenko, A.V. Kochetov,
G.B. Kolesov, N.L. Podkolodny, L. Milanesi,
E. Wingender, T. Heinemeyer, V.V. Solvyev
Bayesian Protein Family Classifier
K. Qu. L.A. McCue, C.E. Lawrence
Hierarchical Minimization with Distance and Angle Constraints
J.R. Gunn
The Ribosome Scanning Model for Translation Initiation:
Implications for Gene Prediction and Full-Length cDNA
Detection
P. Agarwal, V. Bafna
A Statistical Theory of Sequence Alignment with Gaps
D. Drasdo, T. Hwa, M. Lassig
A Surface Measure for Probabilistic Structural Computations
J.P. Schmidt, C.C. Chen, J.L. Cooper, R.B. Altman
Calculating the Exact Probability of Language-like
Patterns in Biomolecular Sequences
K. Atteson
Prediction of Signal Peptides and Signal Anchors by
a Hidden Markov Model
H. Nielsen, A. Krogh
A Hidden Markov Model for Predicting Transmembrane Helices
in Protein Sequences
E.L.L. Sonnhammer, G. von Heijne, A. Krogh
The LabFlow System for Workflow Management in Large Scale
Biology Research Laboratories
N. Goodman, S. Rozen, L.D. Stein
Identification of Divergent Functions in Homologous
Proteins by Induction over Conserved Modules
I. Shah, L. Hunter
Modeling Protein Homopolymeric Repeats: Possible Poly Glutamine
Structural Motifs for Huntington's Disease
R.H. Lathrop, M. Casale, D.J. Tobias, J.L. Marsh, L.M. Thompson