ISMB'98 Accepted Papers



 A Computational System for Modelling Flexible
           Protein-protein and Protein-DNA Docking
         M.J.E. Sternberg, P. Aloy, H.A. Gabb, R.M. Jackson, G. Moont,
         E. Querol, F.X. Aviles	

 Genetic Algorithms for Protein Threading
         J. Yadgari, A. Amir, R. Unger

 Advanced Query Mechanisms for Biological Databases
         I-M. A. Chen, A.S. Kosky, V.M. Markowitz, E. Szeto,
         T. Topaloglou

 Compression of Strings with Approximate Repeats
         L. Allison, T. Edgoose, T.I. Dix

 Sequence Assembly Validation by Multiple Restriction
             Digest Fragment Coverage Analysis
         E.C. Rouchka, D.J. States

 IMGT/LIGM-DB: A Systematized Approach for ImMunoGeneTics 
             Database Coherence and Data Distribution Improvement
         V. Giudicelli, D. Chaume, M-P. Lefranc

 Segment-based Scores for Pairwise and Multiple Sequence
             Alignments
         B. Morgenstern, W.R. Atchley, K. Hahn, A. Dress

 Computational Applications of DNA Physical Scales
         P. Baldi, S. Brunak, Y, Chauvin, A.G. Pedersen

 A Map of the Proteins Space - An Automatic Hierarchical Classification
              of all Known Proteins
         G. Yona, N. Linial, N. Tishby, M. Linial

 Automated Clustering and Assembly of Large EST Collections
         D.P. Yee, D. Conklin

 Phylogenetic Inference in Protein Superfamilies: Analysis
              of SH2 Domains
         K. Sjolander

 BioSim - A New Qualitative Simulation Environment for Molecular
             Biology
         K.R. Heidtke, S. Schulze-Kremer

 TAMBIS: Transparent Access to Multiple Bioinformatics
            Information Sources. An Overview
         P.G. Baker, A. Brass, S. Bechhofer, C. Goble, N. Paton,
         R. Stevens

 Genexpress: A Computer System for Description, Analysis and
           Recognition of Regulatory Sequences in Eukaryotic Genome
         N.A. Kolchanov, M.P. Ponomarenko, A.E. Kel, Y.V. Kondrakhin,
         A.S. Frolov, F.A. Kolpakov, O.V. Kel, E.A. Ananko, 
         E.V. Ignatieva, O.A. Podkolodnaya, I.L. Stepanenko,
         T.I. Merkulova, V.N. Babenko, D.G. Voroblev, 
         S.V. Lavyushev, Y.V. Ponomarenko, A.V. Kochetov,
         G.B. Kolesov, N.L. Podkolodny, L. Milanesi,
         E. Wingender, T. Heinemeyer, V.V. Solvyev

 Bayesian Protein Family Classifier
         K. Qu. L.A. McCue, C.E. Lawrence

 Hierarchical Minimization with Distance and Angle Constraints
         J.R. Gunn

 The Ribosome Scanning Model for Translation Initiation:
           Implications for Gene Prediction and Full-Length cDNA
           Detection
         P. Agarwal, V. Bafna

 A Statistical Theory of Sequence Alignment with Gaps
         D. Drasdo, T. Hwa, M. Lassig

 A Surface Measure for Probabilistic Structural Computations
         J.P. Schmidt, C.C. Chen, J.L. Cooper, R.B. Altman

 Calculating the Exact Probability of Language-like
            Patterns in Biomolecular Sequences
         K. Atteson

 Prediction of Signal Peptides and Signal Anchors by
             a Hidden Markov Model
         H. Nielsen, A. Krogh

 A Hidden Markov Model for Predicting Transmembrane Helices
            in Protein Sequences
         E.L.L. Sonnhammer, G. von Heijne, A. Krogh

 The LabFlow System for Workflow Management in Large Scale
             Biology Research Laboratories
         N. Goodman, S. Rozen, L.D. Stein

 Identification of Divergent Functions in Homologous
           Proteins by Induction over Conserved Modules
         I. Shah, L. Hunter

 Modeling Protein Homopolymeric Repeats: Possible Poly Glutamine 
           Structural Motifs for Huntington's Disease
         R.H. Lathrop, M. Casale, D.J. Tobias, J.L. Marsh, L.M. Thompson